Timeline


and

06/24/13:

12:36 Ticket #1927 (Finish flip axis plugin) created by bdezonia
The FlipAxis plugin was created to work around an ImageJ 1.x limitation …
10:57 Ticket #1926 (Do not call apt directly in CheckSezpoz) created by dscho
We should use the …
10:54 Ticket #1925 (Do not hardcode the sezpoz version in CheckSezpoz) created by dscho
We should use the POM tools we developed to eat our own dog food ;-)

06/18/13:

15:55 Ticket #1924 (Offer project templates for use with the maven-archetype-plugin) created by dscho
It would be nice to be able to initialize a new Maven project for a new …

06/14/13:

11:14 Ticket #1846 (Fix missing tags in ImageJA) closed by dscho
fixed: I manually tagged all ImageJA releases, and changed the …

06/13/13:

15:35 Ticket #1922 (Delete data can throw exception) closed by bdezonia
fixed: Fixed with commit 01fc07e5c03090bfa8f4f0a821086e043e442c33
13:16 Ticket #1883 (Create a caching/stash service) closed by bdezonia
duplicate: Closing as duplicate of #1890.
13:10 Ticket #1923 (Support metadata, units, etc.) created by bdezonia
There are a number of tickets associated with improving the handling of …
13:07 Ticket #1895 (Thresholding code does not use Imglib Histogram classes) closed by bdezonia
fixed: Fixed with commit 687b5a4796f5d2bae06e046ae5c384a8ce8a738d
13:03 Ticket #1793 (Make sure that our main projects have Javadocs built by Jenkins jobs) closed by dscho
fixed: I also added a job for SCIFIO. It is time to close this ticket now because …
13:02 Ticket #1740 (Support Dropbox-backed update sites better) closed by dscho
fixed: DropBox made it harder for us by leaking information about the …
13:00 Ticket #1738 (Support 'unstable' update channels) closed by dscho
fixed: I'll just close this, now that we have the ability to shadow/unshadow …
12:55 Ticket #1502 (Create a user story for the release [ndim-data]) closed by bdezonia
fixed: Blog entry here: …
09:34 Ticket #1922 (Delete data can throw exception) created by bdezonia
Open Organ of Corti Run the Delete Data plugin Specify Z axis, position 9, …

06/12/13:

21:37 Ticket #1864 (Add a convenient UI to the updater to initialize a personal update site) closed by dscho
fixed: This was addressed in 52ed303c6fd159f81f8d5a88884bac55bf65bd76.
17:00 Ticket #1916 (Sliders can get out of whack) closed by bdezonia
fixed: Fixed with commit a0e7d4eed512c07ff559b4e31e204e212d90cd99
16:35 Milestone imagej2-b7-ndim-data completed
Beta release focusing on robust core support for N-dimensional data, …
15:15 Ticket #1916 (Sliders can get out of whack) reopened by bdezonia
The fix has been reverted. ctr had some ideas on a better approach.
15:09 Ticket #1896 (Threshold overlay draws on all planes) closed by bdezonia
worksforme: Also verified that I cannot duplicate with post beta 7 threshold drawing …
15:02 Ticket #1916 (Sliders can get out of whack) closed by bdezonia
fixed: Fixed with commit 4f36454cfa6a14b3b74042dffb66c349a57aac56
14:08 Ticket #1316 (Example where Brightness/Contrast issues are apparent) closed by bdezonia
worksforme: Retested post beta 7. There really is no effective difference between IJ1 …
13:52 Ticket #1888 (Lookup table menu has %20's instead of spaces) closed by bdezonia
fixed: Fix made more robust with commit 80fc52831deeea4afe592f208f01d7c15cf8b7cc
13:51 Ticket #1888 (Lookup table menu has %20's instead of spaces) reopened by bdezonia
13:23 Ticket #1904 (Table resulting from analyze particles has null title) closed by bdezonia
fixed: Fixed with commit 5fde7b5c41467ddad5f256dbee43b584ae179fe6
13:02 Ticket #1903 (Color tables can get munged across legacy layer) closed by bdezonia
worksforme: Cannot duplicate using version shortly after beta 7 release. It loads as …
12:53 Ticket #1888 (Lookup table menu has %20's instead of spaces) closed by bdezonia
fixed: Fixed with commit 60b8d4d470256b870d1a20a487cd052e8728736a
12:01 Ticket #1917 (Stack Reverser shows problems with virtual stacks) closed by bdezonia
fixed: Note that Flip Axis works along any axis and thus works with Hyperstacks …
11:00 Ticket #1619 (Autocontrast issues with sampling) closed by bdezonia
fixed: Merged to master. Closing.
10:57 Ticket #1918 (Threshold colors don't change) closed by bdezonia
fixed: Merged to master. Closing.

06/10/13:

15:22 Ticket #1741 (Move the IRC bot from pacific to fiji.sc) closed by curtis
fixed: Done! Bot stuff lives in /data/devel/irc-bot. Both #fiji-devel and …
15:05 Ticket #1267 (Synchronize Windows likely broken) closed by bdezonia
duplicate: Duplicate of #1289
14:44 Ticket #751 (Legacy translation test cases) closed by bdezonia
fixed: Yes, this is working. Closing.

06/07/13:

17:12 Ticket #1693 (Integrate well with CellProfiler) closed by curtis
fixed: Thanks for the summary, Lee. > We create a bitmap ROI for input images …
16:15 Ticket #990 (Provide meaningful ImgLib2 examples and code templates) closed by curtis
fixed: Closing this ticket. See:  http://fiji.sc/ImgLib2_Examples. More can always …
16:11 Ticket #1116 (Possible changes for Tiger support) closed by curtis
duplicate: Merging with #1115.
16:03 Ticket #578 (IJ1 Channels Tool does not work) closed by curtis
wontfix: ImageJ2 has its own Channels Tool implementation. We don't need to support …
15:49 Ticket #1366 (Reimplement some IJ1 plugins [ndim-data]) closed by curtis
fixed: All constituent tickets have been resolved. Closed.
15:44 Ticket #1921 (Create an IOPlugin) created by curtis
File Open and File Save are currently extensible for images, thanks to …
15:38 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) closed by curtis
duplicate: NB: This ticket is a duplicate of #9.
15:38 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) reopened by curtis
15:38 Ticket #9 (Redesign core I/O infrastructure) closed by curtis
fixed
15:34 Ticket #1920 (Improve I/O support [analysis]) created by curtis
This feature is for improvements to ImageJ's data input and output …
15:19 Ticket #20 (Efficient support for very large image data) closed by curtis
fixed: Thanks to SCIFIOCellImg, we have initial support for huge image data. …
15:15 Ticket #216 (New ImgLib container types for use with imglib-io) closed by curtis
fixed: As far as I'm concerned, this ticket is resolved now that we have …
15:11 Ticket #1669 (Break reliance on Imglib2's PlanarContainer) closed by curtis
fixed: The scifio-cells branch has been merged; ImageJ2 now uses CellImg
15:03 Ticket #1608 (Fix build system issues [ndim-data]) closed by bdezonia
fixed: All constituent tasks completed. Closing feature.
15:00 Ticket #1919 (Fix build system issues [analysis]) created by bdezonia
This ticket represents issues with the ImageJ2 build system and project …
14:35 Ticket #1695 (Thresholding composite image does not draw well) closed by bdezonia
duplicate: Tested with fix-thresh-draw branch and problems not apparent. This bug is …

06/06/13:

16:49 Ticket #1918 (Threshold colors don't change) created by bdezonia
When adjusting a threshold one can choose the display type. However none …
16:29 Ticket #1917 (Stack Reverser shows problems with virtual stacks) created by bdezonia
Running the legacy stack reverser command on a CelImg backed set of data …
15:47 Ticket #1705 (Improve website resources [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:47 Ticket #1563 (Fix obviously failing commands [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:46 Ticket #1907 (Files open multichannel incorrectly) closed by bdezonia
fixed
15:45 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:45 Ticket #1905 (Improve Brightness and Contrast functionality [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:45 Ticket #1901 (Improve the Updater [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:44 Ticket #1729 (Clean up after fiji.sc move to Madison [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:44 Ticket #1672 (Previously completed work) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:44 Ticket #1660 (Implement some IJ1 plugins) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:43 Ticket #1610 (Port some legacy concepts into IJ2) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:43 Ticket #1460 (Add new functionality to showcase IJ2 [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:43 Ticket #1398 (Recommended architecture changes [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:42 Ticket #1273 (Add thresholding capabilities) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:42 Ticket #1203 (Improve histograms [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:41 Ticket #1661 (More seamless integration of IJ1 & IJ2 [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:41 Ticket #1009 (Migrate SLIM Plugin to ImageJ2 [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
14:36 Ticket #1916 (Sliders can get out of whack) created by bdezonia
Use the attached file Move the channel slider to 6 or so Run Image …

06/05/13:

15:47 Ticket #1915 (Improve website resources [analysis]) created by bdezonia
This ticket is for improvements to ImageJ website resources slated for the …
15:39 Ticket #1914 (More seamless integration of IJ1 & IJ2 [analysis]) created by bdezonia
15:35 Ticket #1871 (Change how binary data is checked and synchronized) closed by bdezonia
fixed: Merged. Closing.
15:25 Ticket #1913 (Migrate SLIM plugin to ImageJ2 [analysis]) created by bdezonia
The SLIM Plugin is currently written to work within ImageJ1, which is …
15:09 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) created by bdezonia
ImageJ's current I/O infrastructure is largely built around the …
11:43 Ticket #1911 (Image loading code needs feedback mechanism) created by bdezonia
Now that we support CellImg backed virtual data in the file loader the …
09:49 Ticket #1910 (Overlay draws on wrong plane) created by bdezonia
Open a composite image (such as Leaf or Lena etc.) Change the channel …

06/04/13:

14:32 Ticket #1909 (Color Threshold plugin should be interactive) created by bdezonia
In IJ1 the Color Threshold plugin draws the threshold as the sliders are …
13:43 Ticket #1908 (These images don't look right) created by bdezonia
The following images do not appear correct in IJ2. In Fiji they look fine.
13:41 Ticket #1907 (Files open multichannel incorrectly) created by bdezonia
I have a number of files that open as multichannel when in fact they may …
12:57 Ticket #1906 (Clean up after fiji.sc move to Madison [analysis]) created by bdezonia
This is a general feature ticket to be the mother of all the tickets …
12:40 Ticket #1905 (Improve Brightness and Contrast functionality [ndim-data]) created by bdezonia
12:37 Ticket #1810 (Brightness/Contrast should have Default button) closed by bdezonia
fixed: Merged. Closing.
12:17 Ticket #1549 (Start even when ij.jar is corrupted or not present) closed by dscho
fixed: Somewhere along the line, this got fixed. I think it was when we switched …
11:50 Ticket #583 (Smarter memory management/detection) closed by bdezonia
fixed: Merged. Closing.
11:49 Ticket #1872 (Cell Img types should act as virtual stacks in IJ1) closed by bdezonia
fixed: Merged. Closing.
11:49 Ticket #1885 (Create an AutoscaleService) closed by bdezonia
fixed: Merged. Closing.
11:47 Ticket #1900 (IJ2 does not support text table luts) closed by bdezonia
fixed: Merged. Closing.
11:47 Ticket #1892 (Threshold dialog will not initialize/display) closed by bdezonia
fixed: Merged. Closing.
11:46 Ticket #1887 (Some calibrations are NaN) closed by bdezonia
fixed: Merged. Closing.
11:44 Ticket #1880 (Incorrect display range propagation) closed by bdezonia
fixed: Merged. Closing.
11:44 Ticket #1870 (SCIFIO barfs on this PNG file) closed by bdezonia
fixed: Merged. Closing.
11:42 Ticket #1834 (Drag and Drop: minor drawing issue) closed by bdezonia
fixed: Merged. Closing.
11:40 Ticket #1703 (Automatic binary image conversion can be unexpected) closed by bdezonia
fixed: Code merged. Closing.
11:04 Ticket #1904 (Table resulting from analyze particles has null title) created by bdezonia
Open the Particles sample image Run Analyze Particles Eventually an IJ2 …
10:36 Ticket #1903 (Color tables can get munged across legacy layer) created by bdezonia
Open the attached file Notice it has 3 channels with 3 different color …

06/03/13:

16:31 Ticket #1902 (Investigate a better chat service) created by dscho
So far, we relied on IRC. The problem is that it is really unreliable (due …

05/31/13:

16:01 Ticket #1901 (Improve the Updater [ndim-data]) created by bdezonia
In general, the Updater is quite good, but due to a few changes we wanted …
11:36 Ticket #1900 (IJ2 does not support text table luts) created by bdezonia
Drag and drop the attached lut file on the ImageJ app frame. It never …

05/30/13:

14:35 Ticket #1899 (Threshold should work with current plane if possible) created by bdezonia
The current threshold plugin does a scan of the entire dataset to …
11:21 Ticket #1898 (Threshold does not always update) closed by bdezonia
fixed: Fixed with commit d68194fa58e8e337c619aee161db2c2c291baa34
11:20 Ticket #1898 (Threshold does not always update) created by bdezonia
If you adjust min/max ranges in thresh dialog the display does not always …
11:11 Ticket #1897 (Exception in thresholding) closed by bdezonia
fixed: Fixed with commit 779975c76bd6b4a0edd076ca929ec082e7c2ead8
10:17 Ticket #1371 (Detect when ImageJ.app/ is in C:\Program Files\ on Windows and the current ...) closed by dscho
fixed: Fixed in 161882725c2255b4a80d2a4449ef836e17402ebc.

05/29/13:

15:27 Ticket #1897 (Exception in thresholding) created by bdezonia
Open attached file Change view to 2nd plane Run adjust threshold Exception …
12:45 Ticket #1896 (Threshold overlay draws on all planes) created by bdezonia
Load the attached file Run the Threshold command Adjust min/max such that …
12:22 Ticket #1895 (Thresholding code does not use Imglib Histogram classes) created by bdezonia
The Threshold plugin and the AUtothreshold methods use long[] based …
10:48 Ticket #1894 (Add a "repair installation" button to the updater) created by dscho
Sometimes things are screwed up in one of only a few common ways: - …

05/28/13:

18:53 Ticket #1893 (Handle case-insensitive filesystems in the updater) created by dscho
When uploading files (or files in directories) that differ only in case, …
17:13 Ticket #1892 (Threshold dialog will not initialize/display) created by bdezonia
Testing on the scifio-cells branch: one cannot successfully bring up the …
16:47 Ticket #799 (IJ2 Convert to Mask throws exception) closed by bdezonia
fixed: The code around this has changed such that this error cannot be …
14:54 Ticket #1891 (Convert appropriate commands to PlanarCommand) created by hinerm
The PlanarCommand interface is intended to allow plugins to easily …
10:43 Ticket #1128 (Unify ImgLib2 Histogram implementations) closed by bdezonia
fixed: The histogram changes I made are in Imglib's master branch in the Imglib2 …

05/25/13:

10:03 Ticket #1890 (Add StashService to SciJava Common) created by curtis
We need a general-purpose way to associate metadata with objects. (SciJava …
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