Timeline
06/13/13:
- 15:35 Ticket #1922 (Delete data can throw exception) closed by
- fixed: Fixed with commit 01fc07e5c03090bfa8f4f0a821086e043e442c33
- 13:16 Ticket #1883 (Create a caching/stash service) closed by
- duplicate: Closing as duplicate of #1890.
- 13:10 Ticket #1923 (Support metadata, units, etc.) created by
- There are a number of tickets associated with improving the handling of …
- 13:07 Ticket #1895 (Thresholding code does not use Imglib Histogram classes) closed by
- fixed: Fixed with commit 687b5a4796f5d2bae06e046ae5c384a8ce8a738d
- 13:03 Ticket #1793 (Make sure that our main projects have Javadocs built by Jenkins jobs) closed by
- fixed: I also added a job for SCIFIO. It is time to close this ticket now because …
- 13:02 Ticket #1740 (Support Dropbox-backed update sites better) closed by
- fixed: DropBox made it harder for us by leaking information about the …
- 13:00 Ticket #1738 (Support 'unstable' update channels) closed by
- fixed: I'll just close this, now that we have the ability to shadow/unshadow …
- 12:55 Ticket #1502 (Create a user story for the release [ndim-data]) closed by
- fixed: Blog entry here: …
- 09:34 Ticket #1922 (Delete data can throw exception) created by
- Open Organ of Corti Run the Delete Data plugin Specify Z axis, position 9, …
06/12/13:
- 21:37 Ticket #1864 (Add a convenient UI to the updater to initialize a personal update site) closed by
- fixed: This was addressed in 52ed303c6fd159f81f8d5a88884bac55bf65bd76.
- 17:00 Ticket #1916 (Sliders can get out of whack) closed by
- fixed: Fixed with commit a0e7d4eed512c07ff559b4e31e204e212d90cd99
- 16:35 Milestone imagej2-b7-ndim-data completed
- Beta release focusing on robust core support for N-dimensional data, …
- 15:15 Ticket #1916 (Sliders can get out of whack) reopened by
- The fix has been reverted. ctr had some ideas on a better approach.
- 15:09 Ticket #1896 (Threshold overlay draws on all planes) closed by
- worksforme: Also verified that I cannot duplicate with post beta 7 threshold drawing …
- 15:02 Ticket #1916 (Sliders can get out of whack) closed by
- fixed: Fixed with commit 4f36454cfa6a14b3b74042dffb66c349a57aac56
- 14:08 Ticket #1316 (Example where Brightness/Contrast issues are apparent) closed by
- worksforme: Retested post beta 7. There really is no effective difference between IJ1 …
- 13:52 Ticket #1888 (Lookup table menu has %20's instead of spaces) closed by
- fixed: Fix made more robust with commit 80fc52831deeea4afe592f208f01d7c15cf8b7cc
- 13:51 Ticket #1888 (Lookup table menu has %20's instead of spaces) reopened by
- 13:23 Ticket #1904 (Table resulting from analyze particles has null title) closed by
- fixed: Fixed with commit 5fde7b5c41467ddad5f256dbee43b584ae179fe6
- 13:02 Ticket #1903 (Color tables can get munged across legacy layer) closed by
- worksforme: Cannot duplicate using version shortly after beta 7 release. It loads as …
- 12:53 Ticket #1888 (Lookup table menu has %20's instead of spaces) closed by
- fixed: Fixed with commit 60b8d4d470256b870d1a20a487cd052e8728736a
- 12:01 Ticket #1917 (Stack Reverser shows problems with virtual stacks) closed by
- fixed: Note that Flip Axis works along any axis and thus works with Hyperstacks …
- 11:00 Ticket #1619 (Autocontrast issues with sampling) closed by
- fixed: Merged to master. Closing.
- 10:57 Ticket #1918 (Threshold colors don't change) closed by
- fixed: Merged to master. Closing.
06/10/13:
- 15:22 Ticket #1741 (Move the IRC bot from pacific to fiji.sc) closed by
- fixed: Done! Bot stuff lives in /data/devel/irc-bot. Both #fiji-devel and …
- 15:05 Ticket #1267 (Synchronize Windows likely broken) closed by
- duplicate: Duplicate of #1289
- 14:44 Ticket #751 (Legacy translation test cases) closed by
- fixed: Yes, this is working. Closing.
06/07/13:
- 17:12 Ticket #1693 (Integrate well with CellProfiler) closed by
- fixed: Thanks for the summary, Lee. > We create a bitmap ROI for input images …
- 16:15 Ticket #990 (Provide meaningful ImgLib2 examples and code templates) closed by
- fixed: Closing this ticket. See: http://fiji.sc/ImgLib2_Examples. More can always …
- 16:11 Ticket #1116 (Possible changes for Tiger support) closed by
- duplicate: Merging with #1115.
- 16:03 Ticket #578 (IJ1 Channels Tool does not work) closed by
- wontfix: ImageJ2 has its own Channels Tool implementation. We don't need to support …
- 15:49 Ticket #1366 (Reimplement some IJ1 plugins [ndim-data]) closed by
- fixed: All constituent tickets have been resolved. Closed.
- 15:44 Ticket #1921 (Create an IOPlugin) created by
- File Open and File Save are currently extensible for images, thanks to …
- 15:38 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) closed by
- duplicate: NB: This ticket is a duplicate of #9.
- 15:38 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) reopened by
- 15:38 Ticket #9 (Redesign core I/O infrastructure) closed by
- fixed
- 15:34 Ticket #1920 (Improve I/O support [analysis]) created by
- This feature is for improvements to ImageJ's data input and output …
- 15:19 Ticket #20 (Efficient support for very large image data) closed by
- fixed: Thanks to SCIFIOCellImg, we have initial support for huge image data. …
- 15:15 Ticket #216 (New ImgLib container types for use with imglib-io) closed by
- fixed: As far as I'm concerned, this ticket is resolved now that we have …
- 15:11 Ticket #1669 (Break reliance on Imglib2's PlanarContainer) closed by
- fixed: The scifio-cells branch has been merged; ImageJ2 now uses CellImg …
- 15:03 Ticket #1608 (Fix build system issues [ndim-data]) closed by
- fixed: All constituent tasks completed. Closing feature.
- 15:00 Ticket #1919 (Fix build system issues [analysis]) created by
- This ticket represents issues with the ImageJ2 build system and project …
- 14:35 Ticket #1695 (Thresholding composite image does not draw well) closed by
- duplicate: Tested with fix-thresh-draw branch and problems not apparent. This bug is …
06/06/13:
- 16:49 Ticket #1918 (Threshold colors don't change) created by
- When adjusting a threshold one can choose the display type. However none …
- 16:29 Ticket #1917 (Stack Reverser shows problems with virtual stacks) created by
- Running the legacy stack reverser command on a CelImg backed set of data …
- 15:47 Ticket #1705 (Improve website resources [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:47 Ticket #1563 (Fix obviously failing commands [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:46 Ticket #1907 (Files open multichannel incorrectly) closed by
- fixed
- 15:45 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:45 Ticket #1905 (Improve Brightness and Contrast functionality [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:45 Ticket #1901 (Improve the Updater [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:44 Ticket #1729 (Clean up after fiji.sc move to Madison [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:44 Ticket #1672 (Previously completed work) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:44 Ticket #1660 (Implement some IJ1 plugins) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:43 Ticket #1610 (Port some legacy concepts into IJ2) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:43 Ticket #1460 (Add new functionality to showcase IJ2 [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:43 Ticket #1398 (Recommended architecture changes [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:42 Ticket #1273 (Add thresholding capabilities) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:42 Ticket #1203 (Improve histograms [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:41 Ticket #1661 (More seamless integration of IJ1 & IJ2 [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 15:41 Ticket #1009 (Migrate SLIM Plugin to ImageJ2 [ndim-data]) closed by
- fixed: All constituent tickets have been resolved for this beta. Closing feature.
- 14:36 Ticket #1916 (Sliders can get out of whack) created by
- Use the attached file Move the channel slider to 6 or so Run Image …
06/05/13:
- 15:47 Ticket #1915 (Improve website resources [analysis]) created by
- This ticket is for improvements to ImageJ website resources slated for the …
- 15:39 Ticket #1914 (More seamless integration of IJ1 & IJ2 [analysis]) created by
- 15:35 Ticket #1871 (Change how binary data is checked and synchronized) closed by
- fixed: Merged. Closing.
- 15:25 Ticket #1913 (Migrate SLIM plugin to ImageJ2 [analysis]) created by
- The SLIM Plugin is currently written to work within ImageJ1, which is …
- 15:09 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) created by
- ImageJ's current I/O infrastructure is largely built around the …
- 11:43 Ticket #1911 (Image loading code needs feedback mechanism) created by
- Now that we support CellImg backed virtual data in the file loader the …
- 09:49 Ticket #1910 (Overlay draws on wrong plane) created by
- Open a composite image (such as Leaf or Lena etc.) Change the channel …
06/04/13:
- 14:32 Ticket #1909 (Color Threshold plugin should be interactive) created by
- In IJ1 the Color Threshold plugin draws the threshold as the sliders are …
- 13:43 Ticket #1908 (These images don't look right) created by
- The following images do not appear correct in IJ2. In Fiji they look fine.
- 13:41 Ticket #1907 (Files open multichannel incorrectly) created by
- I have a number of files that open as multichannel when in fact they may …
- 12:57 Ticket #1906 (Clean up after fiji.sc move to Madison [analysis]) created by
- This is a general feature ticket to be the mother of all the tickets …
- 12:40 Ticket #1905 (Improve Brightness and Contrast functionality [ndim-data]) created by
- 12:37 Ticket #1810 (Brightness/Contrast should have Default button) closed by
- fixed: Merged. Closing.
- 12:17 Ticket #1549 (Start even when ij.jar is corrupted or not present) closed by
- fixed: Somewhere along the line, this got fixed. I think it was when we switched …
- 11:50 Ticket #583 (Smarter memory management/detection) closed by
- fixed: Merged. Closing.
- 11:49 Ticket #1872 (Cell Img types should act as virtual stacks in IJ1) closed by
- fixed: Merged. Closing.
- 11:49 Ticket #1885 (Create an AutoscaleService) closed by
- fixed: Merged. Closing.
- 11:47 Ticket #1900 (IJ2 does not support text table luts) closed by
- fixed: Merged. Closing.
- 11:47 Ticket #1892 (Threshold dialog will not initialize/display) closed by
- fixed: Merged. Closing.
- 11:46 Ticket #1887 (Some calibrations are NaN) closed by
- fixed: Merged. Closing.
- 11:44 Ticket #1880 (Incorrect display range propagation) closed by
- fixed: Merged. Closing.
- 11:44 Ticket #1870 (SCIFIO barfs on this PNG file) closed by
- fixed: Merged. Closing.
- 11:42 Ticket #1834 (Drag and Drop: minor drawing issue) closed by
- fixed: Merged. Closing.
- 11:40 Ticket #1703 (Automatic binary image conversion can be unexpected) closed by
- fixed: Code merged. Closing.
- 11:04 Ticket #1904 (Table resulting from analyze particles has null title) created by
- Open the Particles sample image Run Analyze Particles Eventually an IJ2 …
- 10:36 Ticket #1903 (Color tables can get munged across legacy layer) created by
- Open the attached file Notice it has 3 channels with 3 different color …
06/03/13:
- 16:31 Ticket #1902 (Investigate a better chat service) created by
- So far, we relied on IRC. The problem is that it is really unreliable (due …
05/31/13:
- 16:01 Ticket #1901 (Improve the Updater [ndim-data]) created by
- In general, the Updater is quite good, but due to a few changes we wanted …
- 11:36 Ticket #1900 (IJ2 does not support text table luts) created by
- Drag and drop the attached lut file on the ImageJ app frame. It never …
05/30/13:
- 14:35 Ticket #1899 (Threshold should work with current plane if possible) created by
- The current threshold plugin does a scan of the entire dataset to …
- 11:21 Ticket #1898 (Threshold does not always update) closed by
- fixed: Fixed with commit d68194fa58e8e337c619aee161db2c2c291baa34
- 11:20 Ticket #1898 (Threshold does not always update) created by
- If you adjust min/max ranges in thresh dialog the display does not always …
- 11:11 Ticket #1897 (Exception in thresholding) closed by
- fixed: Fixed with commit 779975c76bd6b4a0edd076ca929ec082e7c2ead8
- 10:17 Ticket #1371 (Detect when ImageJ.app/ is in C:\Program Files\ on Windows and the current ...) closed by
- fixed: Fixed in 161882725c2255b4a80d2a4449ef836e17402ebc.
05/29/13:
- 15:27 Ticket #1897 (Exception in thresholding) created by
- Open attached file Change view to 2nd plane Run adjust threshold Exception …
- 12:45 Ticket #1896 (Threshold overlay draws on all planes) created by
- Load the attached file Run the Threshold command Adjust min/max such that …
- 12:22 Ticket #1895 (Thresholding code does not use Imglib Histogram classes) created by
- The Threshold plugin and the AUtothreshold methods use long[] based …
- 10:48 Ticket #1894 (Add a "repair installation" button to the updater) created by
- Sometimes things are screwed up in one of only a few common ways: - …
05/28/13:
- 18:53 Ticket #1893 (Handle case-insensitive filesystems in the updater) created by
- When uploading files (or files in directories) that differ only in case, …
- 17:13 Ticket #1892 (Threshold dialog will not initialize/display) created by
- Testing on the scifio-cells branch: one cannot successfully bring up the …
- 16:47 Ticket #799 (IJ2 Convert to Mask throws exception) closed by
- fixed: The code around this has changed such that this error cannot be …
- 14:54 Ticket #1891 (Convert appropriate commands to PlanarCommand) created by
- The PlanarCommand interface is intended to allow plugins to easily …
- 10:43 Ticket #1128 (Unify ImgLib2 Histogram implementations) closed by
- fixed: The histogram changes I made are in Imglib's master branch in the Imglib2 …
05/25/13:
- 10:03 Ticket #1890 (Add StashService to SciJava Common) created by
- We need a general-purpose way to associate metadata with objects. (SciJava …
05/24/13:
- 14:05 Ticket #1889 (Split channels not working) created by
- If you make a 3-channel image and run Split Channels you can be warned …
05/23/13:
- 15:44 Ticket #1888 (Lookup table menu has %20's instead of spaces) created by
- The code that auto discovers the lookup table menu hierarchy is showing …
- 15:01 Ticket #1887 (Some calibrations are NaN) created by
- Using the scifio opener (on the scifio-cells branch of IJ2) when you open …
- 14:14 Ticket #1886 (Virtual stack approach insufficient) created by
- On the scifio-cells branch CellImg backed data is represented across the …
05/22/13:
- 11:06 Ticket #1885 (Create an AutoscaleService) created by
- Working with large datasets points out the need for autoscale computations …
- 10:54 Ticket #1884 (Utilize PlanarCommand interface) created by
- hinerm has hatched a PlanarCommand interface that allows us to simplify …
- 10:32 Ticket #1882 (Program exit not working well on scifio-cells branch) closed by
- fixed: Tested as fixed.
- 10:05 Ticket #1883 (Create a caching/stash service) created by
- From a discussion with ctrueden: Right now when we calc autoscale we use …
05/21/13:
- 15:48 Ticket #1853 (Add a UI to start/stop shadowing files from another update site) closed by
- fixed: This was fixed in ec605be7c66fd91133ea844abdc28079459b3df2.
- 15:46 Ticket #1655 (Use non-versioned filenames in the updater) closed by
- fixed: This is fixed in 58f694bb0bdd575049e1fded6910a6826c484b85.
- 15:45 Ticket #1827 (Fix updater's conflict resolution of local-only dependencies) closed by
- fixed: This was fixed in 1d4e866a6aaac68d576c0d8475e5f8bb99b8fbc1.
- 15:06 Ticket #1659 (Remove the "Update the updater?" question from the updater) closed by
- fixed: This was fixed in 6a2b5c0ed9f5dd6a9f0c99f220633cf31ff6f255.
05/20/13:
- 16:05 Ticket #1882 (Program exit not working well on scifio-cells branch) created by
- On the scifio-cells branch if you open an image the program will not shut …
- 15:56 Ticket #1881 (CellImg VirtualStack support tricky for composite images) created by
- On the scifio-cells branch of IJ2 there is code in place to treat …
- 10:59 Ticket #1880 (Incorrect display range propagation) created by
- Create a new 1-bit image filled with min (all zero) Draw some pixels with …
- 10:41 Ticket #1879 (Consider allowing File New to create merged color data) created by
- Currently there is no direct way to make merged color data in IJ2. The two …
- 10:09 Ticket #1878 (Plugins to support) created by
- Some OME users have requested that we endeavor to make ImageJ2 compatible …
- 09:38 Ticket #1877 (Image Scale command harmonizes wrong) closed by
- fixed: Fixed with commit a7efa9e1044f73ba24f358be65a6344c8c5ce09a
05/17/13:
- 16:20 Ticket #1877 (Image Scale command harmonizes wrong) created by
- On master Open attached file Change to slice number 3 Run Image Scale (0.5 …
- 08:56 Ticket #1874 (WebDAV uploader: Make sure that umlauts in passwords are handled properly) closed by
- fixed: I addressed the client part of this in …
- 08:50 Ticket #1875 (WebDAV uploader: do not show the proxy dialog upon incorrect password) closed by
- fixed: I addressed these issues in dd1dcf5ae509dc21a9d5055dbb0c125f8a015f40 and …
05/16/13:
- 16:19 Ticket #1876 (Translate IJ1 virtual stacks as CellImgs in IJ2) created by
- Right now any ImagePlus created by a legacy plugin will create a fully …
05/15/13:
- 17:56 Ticket #1875 (WebDAV uploader: do not show the proxy dialog upon incorrect password) created by
- Adrian Daerr (and Curtis Rueden, and Johannes Schindelin) reported that an …
- 17:51 Ticket #1874 (WebDAV uploader: Make sure that umlauts in passwords are handled properly) created by
- Adrian Daerr reported that a password with an umlaut does not get …
- 15:31 Ticket #1823 (Reinstate the contrib branches of fiji.sc) closed by
- fixed: I just fixed this, compiling a custom intermediary between Apache and …
- 13:46 Ticket #1873 (New legacy layer approach) created by
- The legacy layer relies on pixel harmonizers to synchronize data. Another …
- 13:42 Ticket #1872 (Cell Img types should act as virtual stacks in IJ1) created by
- We are making IJ2 sometimes load images as cell imgs of varying type. We …
- 13:37 Ticket #1871 (Change how binary data is checked and synchronized) created by
- The isBinary() code that is utilized in the legacy layer ir problematic: - …
- 10:33 SandBox edited by
- Put in some code formatting, for testing with CSS changes. (diff)
05/14/13:
- 16:48 Ticket #1867 (Uploading files with spaces does not work correctly) closed by
- fixed: Fixed in e18fd7dea19e620d79c45fb3762c76f1ad198e81.
- 14:56 Ticket #1870 (SCIFIO barfs on this PNG file) created by
- I'm on the scifiocells branches. The attached PNG, which opens fine in …
- 13:56 Ticket #1869 (Improve Compositing of SCIFIOCellImgs) created by
- Currently all compositing by the DefaultDatasetView in IJ2 is through the …
- 13:44 Ticket #1868 (Take advantage of cell iteration order) created by
- Currently, the DefaultDatasetView's use of an ARGBScreenImage (which is an …
- 11:11 Ticket #1867 (Uploading files with spaces does not work correctly) created by
- If you upload a file with a space in the name, the uploader incorrectly …
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