Timeline


and

06/10/13:

15:22 Ticket #1741 (Move the IRC bot from pacific to fiji.sc) closed by curtis
fixed: Done! Bot stuff lives in /data/devel/irc-bot. Both #fiji-devel and …
15:05 Ticket #1267 (Synchronize Windows likely broken) closed by bdezonia
duplicate: Duplicate of #1289
14:44 Ticket #751 (Legacy translation test cases) closed by bdezonia
fixed: Yes, this is working. Closing.

06/07/13:

17:12 Ticket #1693 (Integrate well with CellProfiler) closed by curtis
fixed: Thanks for the summary, Lee. > We create a bitmap ROI for input images …
16:15 Ticket #990 (Provide meaningful ImgLib2 examples and code templates) closed by curtis
fixed: Closing this ticket. See:  http://fiji.sc/ImgLib2_Examples. More can always …
16:11 Ticket #1116 (Possible changes for Tiger support) closed by curtis
duplicate: Merging with #1115.
16:03 Ticket #578 (IJ1 Channels Tool does not work) closed by curtis
wontfix: ImageJ2 has its own Channels Tool implementation. We don't need to support …
15:49 Ticket #1366 (Reimplement some IJ1 plugins [ndim-data]) closed by curtis
fixed: All constituent tickets have been resolved. Closed.
15:44 Ticket #1921 (Create an IOPlugin) created by curtis
File Open and File Save are currently extensible for images, thanks to …
15:38 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) closed by curtis
duplicate: NB: This ticket is a duplicate of #9.
15:38 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) reopened by curtis
15:38 Ticket #9 (Redesign core I/O infrastructure) closed by curtis
fixed
15:34 Ticket #1920 (Improve I/O support [analysis]) created by curtis
This feature is for improvements to ImageJ's data input and output …
15:19 Ticket #20 (Efficient support for very large image data) closed by curtis
fixed: Thanks to SCIFIOCellImg, we have initial support for huge image data. …
15:15 Ticket #216 (New ImgLib container types for use with imglib-io) closed by curtis
fixed: As far as I'm concerned, this ticket is resolved now that we have …
15:11 Ticket #1669 (Break reliance on Imglib2's PlanarContainer) closed by curtis
fixed: The scifio-cells branch has been merged; ImageJ2 now uses CellImg
15:03 Ticket #1608 (Fix build system issues [ndim-data]) closed by bdezonia
fixed: All constituent tasks completed. Closing feature.
15:00 Ticket #1919 (Fix build system issues [analysis]) created by bdezonia
This ticket represents issues with the ImageJ2 build system and project …
14:35 Ticket #1695 (Thresholding composite image does not draw well) closed by bdezonia
duplicate: Tested with fix-thresh-draw branch and problems not apparent. This bug is …

06/06/13:

16:49 Ticket #1918 (Threshold colors don't change) created by bdezonia
When adjusting a threshold one can choose the display type. However none …
16:29 Ticket #1917 (Stack Reverser shows problems with virtual stacks) created by bdezonia
Running the legacy stack reverser command on a CelImg backed set of data …
15:47 Ticket #1705 (Improve website resources [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:47 Ticket #1563 (Fix obviously failing commands [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:46 Ticket #1907 (Files open multichannel incorrectly) closed by bdezonia
fixed
15:45 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:45 Ticket #1905 (Improve Brightness and Contrast functionality [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:45 Ticket #1901 (Improve the Updater [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:44 Ticket #1729 (Clean up after fiji.sc move to Madison [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:44 Ticket #1672 (Previously completed work) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:44 Ticket #1660 (Implement some IJ1 plugins) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:43 Ticket #1610 (Port some legacy concepts into IJ2) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:43 Ticket #1460 (Add new functionality to showcase IJ2 [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:43 Ticket #1398 (Recommended architecture changes [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:42 Ticket #1273 (Add thresholding capabilities) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:42 Ticket #1203 (Improve histograms [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:41 Ticket #1661 (More seamless integration of IJ1 & IJ2 [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
15:41 Ticket #1009 (Migrate SLIM Plugin to ImageJ2 [ndim-data]) closed by bdezonia
fixed: All constituent tickets have been resolved for this beta. Closing feature.
14:36 Ticket #1916 (Sliders can get out of whack) created by bdezonia
Use the attached file Move the channel slider to 6 or so Run Image …

06/05/13:

15:47 Ticket #1915 (Improve website resources [analysis]) created by bdezonia
This ticket is for improvements to ImageJ website resources slated for the …
15:39 Ticket #1914 (More seamless integration of IJ1 & IJ2 [analysis]) created by bdezonia
15:35 Ticket #1871 (Change how binary data is checked and synchronized) closed by bdezonia
fixed: Merged. Closing.
15:25 Ticket #1913 (Migrate SLIM plugin to ImageJ2 [analysis]) created by bdezonia
The SLIM Plugin is currently written to work within ImageJ1, which is …
15:09 Ticket #1912 (Redesign core I/O infrastructure [ndim-data]) created by bdezonia
ImageJ's current I/O infrastructure is largely built around the …
11:43 Ticket #1911 (Image loading code needs feedback mechanism) created by bdezonia
Now that we support CellImg backed virtual data in the file loader the …
09:49 Ticket #1910 (Overlay draws on wrong plane) created by bdezonia
Open a composite image (such as Leaf or Lena etc.) Change the channel …

06/04/13:

14:32 Ticket #1909 (Color Threshold plugin should be interactive) created by bdezonia
In IJ1 the Color Threshold plugin draws the threshold as the sliders are …
13:43 Ticket #1908 (These images don't look right) created by bdezonia
The following images do not appear correct in IJ2. In Fiji they look fine.
13:41 Ticket #1907 (Files open multichannel incorrectly) created by bdezonia
I have a number of files that open as multichannel when in fact they may …
12:57 Ticket #1906 (Clean up after fiji.sc move to Madison [analysis]) created by bdezonia
This is a general feature ticket to be the mother of all the tickets …
12:40 Ticket #1905 (Improve Brightness and Contrast functionality [ndim-data]) created by bdezonia
12:37 Ticket #1810 (Brightness/Contrast should have Default button) closed by bdezonia
fixed: Merged. Closing.
12:17 Ticket #1549 (Start even when ij.jar is corrupted or not present) closed by dscho
fixed: Somewhere along the line, this got fixed. I think it was when we switched …
11:50 Ticket #583 (Smarter memory management/detection) closed by bdezonia
fixed: Merged. Closing.
11:49 Ticket #1872 (Cell Img types should act as virtual stacks in IJ1) closed by bdezonia
fixed: Merged. Closing.
11:49 Ticket #1885 (Create an AutoscaleService) closed by bdezonia
fixed: Merged. Closing.
11:47 Ticket #1900 (IJ2 does not support text table luts) closed by bdezonia
fixed: Merged. Closing.
11:47 Ticket #1892 (Threshold dialog will not initialize/display) closed by bdezonia
fixed: Merged. Closing.
11:46 Ticket #1887 (Some calibrations are NaN) closed by bdezonia
fixed: Merged. Closing.
11:44 Ticket #1880 (Incorrect display range propagation) closed by bdezonia
fixed: Merged. Closing.
11:44 Ticket #1870 (SCIFIO barfs on this PNG file) closed by bdezonia
fixed: Merged. Closing.
11:42 Ticket #1834 (Drag and Drop: minor drawing issue) closed by bdezonia
fixed: Merged. Closing.
11:40 Ticket #1703 (Automatic binary image conversion can be unexpected) closed by bdezonia
fixed: Code merged. Closing.
11:04 Ticket #1904 (Table resulting from analyze particles has null title) created by bdezonia
Open the Particles sample image Run Analyze Particles Eventually an IJ2 …
10:36 Ticket #1903 (Color tables can get munged across legacy layer) created by bdezonia
Open the attached file Notice it has 3 channels with 3 different color …

06/03/13:

16:31 Ticket #1902 (Investigate a better chat service) created by dscho
So far, we relied on IRC. The problem is that it is really unreliable (due …

05/31/13:

16:01 Ticket #1901 (Improve the Updater [ndim-data]) created by bdezonia
In general, the Updater is quite good, but due to a few changes we wanted …
11:36 Ticket #1900 (IJ2 does not support text table luts) created by bdezonia
Drag and drop the attached lut file on the ImageJ app frame. It never …

05/30/13:

14:35 Ticket #1899 (Threshold should work with current plane if possible) created by bdezonia
The current threshold plugin does a scan of the entire dataset to …
11:21 Ticket #1898 (Threshold does not always update) closed by bdezonia
fixed: Fixed with commit d68194fa58e8e337c619aee161db2c2c291baa34
11:20 Ticket #1898 (Threshold does not always update) created by bdezonia
If you adjust min/max ranges in thresh dialog the display does not always …
11:11 Ticket #1897 (Exception in thresholding) closed by bdezonia
fixed: Fixed with commit 779975c76bd6b4a0edd076ca929ec082e7c2ead8
10:17 Ticket #1371 (Detect when ImageJ.app/ is in C:\Program Files\ on Windows and the current ...) closed by dscho
fixed: Fixed in 161882725c2255b4a80d2a4449ef836e17402ebc.

05/29/13:

15:27 Ticket #1897 (Exception in thresholding) created by bdezonia
Open attached file Change view to 2nd plane Run adjust threshold Exception …
12:45 Ticket #1896 (Threshold overlay draws on all planes) created by bdezonia
Load the attached file Run the Threshold command Adjust min/max such that …
12:22 Ticket #1895 (Thresholding code does not use Imglib Histogram classes) created by bdezonia
The Threshold plugin and the AUtothreshold methods use long[] based …
10:48 Ticket #1894 (Add a "repair installation" button to the updater) created by dscho
Sometimes things are screwed up in one of only a few common ways: - …

05/28/13:

18:53 Ticket #1893 (Handle case-insensitive filesystems in the updater) created by dscho
When uploading files (or files in directories) that differ only in case, …
17:13 Ticket #1892 (Threshold dialog will not initialize/display) created by bdezonia
Testing on the scifio-cells branch: one cannot successfully bring up the …
16:47 Ticket #799 (IJ2 Convert to Mask throws exception) closed by bdezonia
fixed: The code around this has changed such that this error cannot be …
14:54 Ticket #1891 (Convert appropriate commands to PlanarCommand) created by hinerm
The PlanarCommand interface is intended to allow plugins to easily …
10:43 Ticket #1128 (Unify ImgLib2 Histogram implementations) closed by bdezonia
fixed: The histogram changes I made are in Imglib's master branch in the Imglib2 …

05/25/13:

10:03 Ticket #1890 (Add StashService to SciJava Common) created by curtis
We need a general-purpose way to associate metadata with objects. (SciJava …

05/24/13:

14:05 Ticket #1889 (Split channels not working) created by bdezonia
If you make a 3-channel image and run Split Channels you can be warned …

05/23/13:

15:44 Ticket #1888 (Lookup table menu has %20's instead of spaces) created by bdezonia
The code that auto discovers the lookup table menu hierarchy is showing …
15:01 Ticket #1887 (Some calibrations are NaN) created by bdezonia
Using the scifio opener (on the scifio-cells branch of IJ2) when you open …
14:14 Ticket #1886 (Virtual stack approach insufficient) created by bdezonia
On the scifio-cells branch CellImg backed data is represented across the …

05/22/13:

11:06 Ticket #1885 (Create an AutoscaleService) created by bdezonia
Working with large datasets points out the need for autoscale computations …
10:54 Ticket #1884 (Utilize PlanarCommand interface) created by bdezonia
hinerm has hatched a PlanarCommand interface that allows us to simplify …
10:32 Ticket #1882 (Program exit not working well on scifio-cells branch) closed by bdezonia
fixed: Tested as fixed.
10:05 Ticket #1883 (Create a caching/stash service) created by bdezonia
From a discussion with ctrueden: Right now when we calc autoscale we use …

05/21/13:

15:48 Ticket #1853 (Add a UI to start/stop shadowing files from another update site) closed by dscho
fixed: This was fixed in ec605be7c66fd91133ea844abdc28079459b3df2.
15:46 Ticket #1655 (Use non-versioned filenames in the updater) closed by dscho
fixed: This is fixed in 58f694bb0bdd575049e1fded6910a6826c484b85.
15:45 Ticket #1827 (Fix updater's conflict resolution of local-only dependencies) closed by dscho
fixed: This was fixed in 1d4e866a6aaac68d576c0d8475e5f8bb99b8fbc1.
15:06 Ticket #1659 (Remove the "Update the updater?" question from the updater) closed by dscho
fixed: This was fixed in 6a2b5c0ed9f5dd6a9f0c99f220633cf31ff6f255.

05/20/13:

16:05 Ticket #1882 (Program exit not working well on scifio-cells branch) created by bdezonia
On the scifio-cells branch if you open an image the program will not shut …
15:56 Ticket #1881 (CellImg VirtualStack support tricky for composite images) created by bdezonia
On the scifio-cells branch of IJ2 there is code in place to treat …
10:59 Ticket #1880 (Incorrect display range propagation) created by bdezonia
Create a new 1-bit image filled with min (all zero) Draw some pixels with …
10:41 Ticket #1879 (Consider allowing File New to create merged color data) created by bdezonia
Currently there is no direct way to make merged color data in IJ2. The two …
10:09 Ticket #1878 (Plugins to support) created by bdezonia
Some OME users have requested that we endeavor to make ImageJ2 compatible …
09:38 Ticket #1877 (Image Scale command harmonizes wrong) closed by bdezonia
fixed: Fixed with commit a7efa9e1044f73ba24f358be65a6344c8c5ce09a

05/17/13:

16:20 Ticket #1877 (Image Scale command harmonizes wrong) created by bdezonia
On master Open attached file Change to slice number 3 Run Image Scale (0.5 …
08:56 Ticket #1874 (WebDAV uploader: Make sure that umlauts in passwords are handled properly) closed by dscho
fixed: I addressed the client part of this in …
08:50 Ticket #1875 (WebDAV uploader: do not show the proxy dialog upon incorrect password) closed by dscho
fixed: I addressed these issues in dd1dcf5ae509dc21a9d5055dbb0c125f8a015f40 and …

05/16/13:

16:19 Ticket #1876 (Translate IJ1 virtual stacks as CellImgs in IJ2) created by bdezonia
Right now any ImagePlus created by a legacy plugin will create a fully …

05/15/13:

17:56 Ticket #1875 (WebDAV uploader: do not show the proxy dialog upon incorrect password) created by dscho
Adrian Daerr (and Curtis Rueden, and Johannes Schindelin) reported that an …
17:51 Ticket #1874 (WebDAV uploader: Make sure that umlauts in passwords are handled properly) created by dscho
Adrian Daerr reported that a password with an umlaut does not get …
15:31 Ticket #1823 (Reinstate the contrib branches of fiji.sc) closed by dscho
fixed: I just fixed this, compiling a custom intermediary between Apache and …
13:46 Ticket #1873 (New legacy layer approach) created by bdezonia
The legacy layer relies on pixel harmonizers to synchronize data. Another …
13:42 Ticket #1872 (Cell Img types should act as virtual stacks in IJ1) created by bdezonia
We are making IJ2 sometimes load images as cell imgs of varying type. We …
13:37 Ticket #1871 (Change how binary data is checked and synchronized) created by bdezonia
The isBinary() code that is utilized in the legacy layer ir problematic: - …
10:33 SandBox edited by curtis
Put in some code formatting, for testing with CSS changes. (diff)

05/14/13:

16:48 Ticket #1867 (Uploading files with spaces does not work correctly) closed by dscho
fixed: Fixed in e18fd7dea19e620d79c45fb3762c76f1ad198e81.
14:56 Ticket #1870 (SCIFIO barfs on this PNG file) created by bdezonia
I'm on the scifiocells branches. The attached PNG, which opens fine in …
13:56 Ticket #1869 (Improve Compositing of SCIFIOCellImgs) created by hinerm
Currently all compositing by the DefaultDatasetView in IJ2 is through the …
13:44 Ticket #1868 (Take advantage of cell iteration order) created by hinerm
Currently, the DefaultDatasetView's use of an ARGBScreenImage (which is an …
11:11 Ticket #1867 (Uploading files with spaces does not work correctly) created by curtis
If you upload a file with a space in the name, the uploader incorrectly …

05/13/13:

17:03 Ticket #1866 (IJ2 true color ranges improperly initialized) created by aivar
DefaultDatasetView.initializeView autoscales each channel independently, …

05/12/13:

12:15 Ticket #1865 (Make backups of sites.imagej.net) closed by dscho
fixed: Just fixed:  http://jenkins.imagej.net/view/Backups/job/Backup-skynet/
12:14 Ticket #1865 (Make backups of sites.imagej.net) created by dscho
We should have a Jenkins job that backs up the personal update sites.
10:29 Ticket #1864 (Add a convenient UI to the updater to initialize a personal update site) created by dscho
Now that we offer personal update sites …
10:17 Ticket #1857 (Feature: sites.imagej.net) closed by dscho
fixed: Since all the children have been handled, this ticket is now officially …
10:16 Ticket #1860 (Add a Jenkins job for monitoring the disk usage on ...) closed by dscho
fixed: This job is now in place: …

05/11/13:

11:31 Ticket #1863 (Fix Jenkins' increasingly frequent "out of PermSpace" errors) closed by dscho
fixed: Inspired by …
10:42 Ticket #1863 (Fix Jenkins' increasingly frequent "out of PermSpace" errors) created by dscho
It seems that for some days (weeks?) Jenkins freezes at some stage, …
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