Timeline


and

05/30/13:

14:35 Ticket #1899 (Threshold should work with current plane if possible) created by bdezonia
The current threshold plugin does a scan of the entire dataset to …
11:21 Ticket #1898 (Threshold does not always update) closed by bdezonia
fixed: Fixed with commit d68194fa58e8e337c619aee161db2c2c291baa34
11:20 Ticket #1898 (Threshold does not always update) created by bdezonia
If you adjust min/max ranges in thresh dialog the display does not always …
11:11 Ticket #1897 (Exception in thresholding) closed by bdezonia
fixed: Fixed with commit 779975c76bd6b4a0edd076ca929ec082e7c2ead8
10:17 Ticket #1371 (Detect when ImageJ.app/ is in C:\Program Files\ on Windows and the current ...) closed by dscho
fixed: Fixed in 161882725c2255b4a80d2a4449ef836e17402ebc.

05/29/13:

15:27 Ticket #1897 (Exception in thresholding) created by bdezonia
Open attached file Change view to 2nd plane Run adjust threshold Exception …
12:45 Ticket #1896 (Threshold overlay draws on all planes) created by bdezonia
Load the attached file Run the Threshold command Adjust min/max such that …
12:22 Ticket #1895 (Thresholding code does not use Imglib Histogram classes) created by bdezonia
The Threshold plugin and the AUtothreshold methods use long[] based …
10:48 Ticket #1894 (Add a "repair installation" button to the updater) created by dscho
Sometimes things are screwed up in one of only a few common ways: - …

05/28/13:

18:53 Ticket #1893 (Handle case-insensitive filesystems in the updater) created by dscho
When uploading files (or files in directories) that differ only in case, …
17:13 Ticket #1892 (Threshold dialog will not initialize/display) created by bdezonia
Testing on the scifio-cells branch: one cannot successfully bring up the …
16:47 Ticket #799 (IJ2 Convert to Mask throws exception) closed by bdezonia
fixed: The code around this has changed such that this error cannot be …
14:54 Ticket #1891 (Convert appropriate commands to PlanarCommand) created by hinerm
The PlanarCommand interface is intended to allow plugins to easily …
10:43 Ticket #1128 (Unify ImgLib2 Histogram implementations) closed by bdezonia
fixed: The histogram changes I made are in Imglib's master branch in the Imglib2 …

05/25/13:

10:03 Ticket #1890 (Add StashService to SciJava Common) created by curtis
We need a general-purpose way to associate metadata with objects. (SciJava …

05/24/13:

14:05 Ticket #1889 (Split channels not working) created by bdezonia
If you make a 3-channel image and run Split Channels you can be warned …

05/23/13:

15:44 Ticket #1888 (Lookup table menu has %20's instead of spaces) created by bdezonia
The code that auto discovers the lookup table menu hierarchy is showing …
15:01 Ticket #1887 (Some calibrations are NaN) created by bdezonia
Using the scifio opener (on the scifio-cells branch of IJ2) when you open …
14:14 Ticket #1886 (Virtual stack approach insufficient) created by bdezonia
On the scifio-cells branch CellImg backed data is represented across the …

05/22/13:

11:06 Ticket #1885 (Create an AutoscaleService) created by bdezonia
Working with large datasets points out the need for autoscale computations …
10:54 Ticket #1884 (Utilize PlanarCommand interface) created by bdezonia
hinerm has hatched a PlanarCommand interface that allows us to simplify …
10:32 Ticket #1882 (Program exit not working well on scifio-cells branch) closed by bdezonia
fixed: Tested as fixed.
10:05 Ticket #1883 (Create a caching/stash service) created by bdezonia
From a discussion with ctrueden: Right now when we calc autoscale we use …

05/21/13:

15:48 Ticket #1853 (Add a UI to start/stop shadowing files from another update site) closed by dscho
fixed: This was fixed in ec605be7c66fd91133ea844abdc28079459b3df2.
15:46 Ticket #1655 (Use non-versioned filenames in the updater) closed by dscho
fixed: This is fixed in 58f694bb0bdd575049e1fded6910a6826c484b85.
15:45 Ticket #1827 (Fix updater's conflict resolution of local-only dependencies) closed by dscho
fixed: This was fixed in 1d4e866a6aaac68d576c0d8475e5f8bb99b8fbc1.
15:06 Ticket #1659 (Remove the "Update the updater?" question from the updater) closed by dscho
fixed: This was fixed in 6a2b5c0ed9f5dd6a9f0c99f220633cf31ff6f255.

05/20/13:

16:05 Ticket #1882 (Program exit not working well on scifio-cells branch) created by bdezonia
On the scifio-cells branch if you open an image the program will not shut …
15:56 Ticket #1881 (CellImg VirtualStack support tricky for composite images) created by bdezonia
On the scifio-cells branch of IJ2 there is code in place to treat …
10:59 Ticket #1880 (Incorrect display range propagation) created by bdezonia
Create a new 1-bit image filled with min (all zero) Draw some pixels with …
10:41 Ticket #1879 (Consider allowing File New to create merged color data) created by bdezonia
Currently there is no direct way to make merged color data in IJ2. The two …
10:09 Ticket #1878 (Plugins to support) created by bdezonia
Some OME users have requested that we endeavor to make ImageJ2 compatible …
09:38 Ticket #1877 (Image Scale command harmonizes wrong) closed by bdezonia
fixed: Fixed with commit a7efa9e1044f73ba24f358be65a6344c8c5ce09a

05/17/13:

16:20 Ticket #1877 (Image Scale command harmonizes wrong) created by bdezonia
On master Open attached file Change to slice number 3 Run Image Scale (0.5 …
08:56 Ticket #1874 (WebDAV uploader: Make sure that umlauts in passwords are handled properly) closed by dscho
fixed: I addressed the client part of this in …
08:50 Ticket #1875 (WebDAV uploader: do not show the proxy dialog upon incorrect password) closed by dscho
fixed: I addressed these issues in dd1dcf5ae509dc21a9d5055dbb0c125f8a015f40 and …

05/16/13:

16:19 Ticket #1876 (Translate IJ1 virtual stacks as CellImgs in IJ2) created by bdezonia
Right now any ImagePlus created by a legacy plugin will create a fully …

05/15/13:

17:56 Ticket #1875 (WebDAV uploader: do not show the proxy dialog upon incorrect password) created by dscho
Adrian Daerr (and Curtis Rueden, and Johannes Schindelin) reported that an …
17:51 Ticket #1874 (WebDAV uploader: Make sure that umlauts in passwords are handled properly) created by dscho
Adrian Daerr reported that a password with an umlaut does not get …
15:31 Ticket #1823 (Reinstate the contrib branches of fiji.sc) closed by dscho
fixed: I just fixed this, compiling a custom intermediary between Apache and …
13:46 Ticket #1873 (New legacy layer approach) created by bdezonia
The legacy layer relies on pixel harmonizers to synchronize data. Another …
13:42 Ticket #1872 (Cell Img types should act as virtual stacks in IJ1) created by bdezonia
We are making IJ2 sometimes load images as cell imgs of varying type. We …
13:37 Ticket #1871 (Change how binary data is checked and synchronized) created by bdezonia
The isBinary() code that is utilized in the legacy layer ir problematic: - …
10:33 SandBox edited by curtis
Put in some code formatting, for testing with CSS changes. (diff)

05/14/13:

16:48 Ticket #1867 (Uploading files with spaces does not work correctly) closed by dscho
fixed: Fixed in e18fd7dea19e620d79c45fb3762c76f1ad198e81.
14:56 Ticket #1870 (SCIFIO barfs on this PNG file) created by bdezonia
I'm on the scifiocells branches. The attached PNG, which opens fine in …
13:56 Ticket #1869 (Improve Compositing of SCIFIOCellImgs) created by hinerm
Currently all compositing by the DefaultDatasetView in IJ2 is through the …
13:44 Ticket #1868 (Take advantage of cell iteration order) created by hinerm
Currently, the DefaultDatasetView's use of an ARGBScreenImage (which is an …
11:11 Ticket #1867 (Uploading files with spaces does not work correctly) created by curtis
If you upload a file with a space in the name, the uploader incorrectly …

05/13/13:

17:03 Ticket #1866 (IJ2 true color ranges improperly initialized) created by aivar
DefaultDatasetView.initializeView autoscales each channel independently, …

05/12/13:

12:15 Ticket #1865 (Make backups of sites.imagej.net) closed by dscho
fixed: Just fixed:  http://jenkins.imagej.net/view/Backups/job/Backup-skynet/
12:14 Ticket #1865 (Make backups of sites.imagej.net) created by dscho
We should have a Jenkins job that backs up the personal update sites.
10:29 Ticket #1864 (Add a convenient UI to the updater to initialize a personal update site) created by dscho
Now that we offer personal update sites …
10:17 Ticket #1857 (Feature: sites.imagej.net) closed by dscho
fixed: Since all the children have been handled, this ticket is now officially …
10:16 Ticket #1860 (Add a Jenkins job for monitoring the disk usage on ...) closed by dscho
fixed: This job is now in place: …

05/11/13:

11:31 Ticket #1863 (Fix Jenkins' increasingly frequent "out of PermSpace" errors) closed by dscho
fixed: Inspired by …
10:42 Ticket #1863 (Fix Jenkins' increasingly frequent "out of PermSpace" errors) created by dscho
It seems that for some days (weeks?) Jenkins freezes at some stage, …

05/10/13:

15:41 Ticket #1859 (Extend Fiji Wiki's Special:ChangeUploadPassword to handle ...) closed by dscho
fixed: This was changed now. It requires an authenticated user now. Iff the user …
15:07 Ticket #1858 (Add the virtual host 'sites.imagej.net') closed by dscho
fixed: I did exactly that, copying large parts of the setup from test.imagej.net …
15:03 Ticket #1862 (Make skynet a restricted Jenkins node) closed by dscho
fixed: I added a new user, jenkins-node, made /var/jenkins/ its home, …
15:00 Ticket #1862 (Make skynet a restricted Jenkins node) created by dscho
To let Jenkins handle the backups, including reports when the backup …
13:14 Ticket #1861 (Update Imglib to use new histogram code) created by bdezonia
Find places in Imglib that are using all the other histogram …
12:58 Ticket #1860 (Add a Jenkins job for monitoring the disk usage on ...) created by dscho
For the moment, sites.imagej.net shares disk space with openspim.org, and …
12:56 Ticket #1859 (Extend Fiji Wiki's Special:ChangeUploadPassword to handle ...) created by dscho
Since we want to offer  http://sites.imagej.net/<username>/ personal update …
12:33 Ticket #1858 (Add the virtual host 'sites.imagej.net') created by dscho
The plan is to let all ImageJ users offer their macros, scripts and …
12:29 Ticket #1857 (Feature: sites.imagej.net) created by dscho
This feature ticket is the mother of all tickets related to offering …
11:44 Ticket #1041 (Make Histogram implement ImgLib2 interfaces) closed by bdezonia
fixed

05/08/13:

16:27 Ticket #1856 (A exit hack) created by bdezonia
In order to always exit safely even if plugin writers do not dispose their …
12:19 Ticket #1855 (HistogramPlot needs List, Copy, and Log command support) created by bdezonia
The HistogramPlot has a few buttons whose functionality is not yet …
12:13 Ticket #865 (Implement Histogram dialog functionality) closed by bdezonia
fixed: There are a few remaining tasks needed to finish this task. But they are …
12:05 Ticket #1854 (HistogramPlot limitations) created by bdezonia
The HistogramPlot plugin has its own UI code to support Swing and …
12:02 Ticket #1853 (Add a UI to start/stop shadowing files from another update site) created by dscho
The idea about "shadowing" is that all update sites listed in a specific …
11:42 Ticket #1852 (HistogramPlot keeps IJ2 from exiting) created by bdezonia
Open an image Run histogram plot command Exit program IJ2 never terminates …

05/07/13:

21:50 Ticket #1851 (Fix Fiji issues with sezpoz) closed by dscho
fixed: I deployed sezpoz-1.9-imagej via scijava-common's release-version.sh (and …
19:40 Ticket #1851 (Fix Fiji issues with sezpoz) created by dscho
Every since fiji-compat depends on scijava-common, there is a problem with …

05/06/13:

11:21 Ticket #1850 (GradientImage example has style issues) created by bdezonia
In the tutorial code we have a simple command example. It creates a …

04/30/13:

12:33 Ticket #1847 (Force the updater to ignore java3d .jar files) closed by dscho
fixed: Fixed in 5a6ffd08583555fe50a7d80c3fcf6133a40bcadd.
10:48 Ticket #1849 (Let bump-pom-scijava increase the major version number when appropriate) created by dscho
At the moment, bump-pom-scijava always increases the minor version number …
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