Timeline


and

09/14/12:

15:29 Ticket #1484 (Update legacy layer to fix some plugin incompatibilities [rois]) created by bdezonia
14:15 Ticket #1483 (Use a sortable table in the Command Finder) closed by dscho
fixed: Fixed in 0a7bee99f1ec3fbd2b886208361ab3f535ecfee6.
14:14 Ticket #1483 (Use a sortable table in the Command Finder) created by dscho
The command finder has this badly-hidden feature that it can show a lot of …
10:15 Ticket #1395 (This feature was a duplicate) closed by bdezonia
invalid
10:15 Ticket #1395 (This feature was a duplicate) reopened by bdezonia
10:15 Ticket #1395 (This feature was a duplicate) closed by bdezonia
fixed
10:10 Ticket #1482 (PointSet anchors are inconsistent in OPS) created by bdezonia
In OPS each PointSet has an anchor (or origin) about which other points …
09:44 Ticket #1481 (Make an editable combobox widget) created by bdezonia
In Add Axis or Edit Axes plugins it would be nice if user could type their …

09/13/12:

15:45 Ticket #1480 (Make About dialog use text overlays) created by bdezonia
Currently the About dialog draws its text destrucvtively into the dataset. …
10:55 Ticket #1097 (Noise Reducer plugin enhancements) closed by bdezonia
fixed: Commit aee3ea93d939223a699cf2a86faaa15de2a670ce involved a total …
10:50 Ticket #1227 (OPS: define a nonparallel ImageAssignment class) closed by bdezonia
fixed: Fixed with Imglib commit 7951bccb357abe993e036175ac927f9472b2fcb4

09/12/12:

10:56 Ticket #1479 (Surface Plot doesn't always work) created by bdezonia
Open Organ Of Corti Split Channels Select channel 3 image (blue) Run …
10:17 Ticket #1478 (Overlay harmonization might cause issues) created by bdezonia
Open Boats. Run Salt and Pepper. Despeckle. Salt/pepper pixels go away. …
10:07 Ticket #1477 (Image > Zoom > To Selection not as accurate as IJ1) created by bdezonia
Run the following command sequence in IJ2 & Ij1 and compare results Open …
10:01 Ticket #1476 (Image > Zoom In menu entry does a zoom out) created by bdezonia
Running Image :: Zoom In via the + key works fine. Running it from the …
09:56 Ticket #1475 (Image > Rename does not update display title) created by bdezonia
Run the legacy command Image > Rename on a legacy loaded image. The …
09:45 Ticket #1474 (Converting color images to grayscale is not intuitive) created by bdezonia
Open Organ Of Corti. Change type to Float 32 bit. Notice that all the …
09:41 Ticket #1473 (Channels Tool sometimes ineffective) created by bdezonia
Create a new Hyperstack via the legacy plugin. Make sure mode is Color. …

09/11/12:

16:40 Ticket #761 (Selection > Make Inverse throws exception) closed by dscho
fixed: This is fixed with the addition of composite ROIs.
16:28 Milestone imagej2-b4-plugins completed
Fourth beta release, focusing on plugins. This includes the plugin …
16:28 Ticket #1269 (Create a user story for the release [plugins]) closed by curtis
fixed: Blog entry [ http://developer.imagej.net/2012/09/11/imagej-v200-beta4
16:01 Ticket #1472 (Images don't always load at optimal scale) created by bdezonia
Sometimes ImageJ2 loads images at a scale other than 100% when in fact …
15:59 Ticket #1471 (Concurrent legacy plugin execution can cause problems) created by curtis
If you execute many legacy plugins very quickly, there may be bugs …
15:51 Ticket #1470 (Eliminate bogus extra polygon tool) created by curtis
There is a grayed out polygon tool next to the working polygon tool on the …
10:55 Ticket #1469 (Document how Git, JUnit, Maven, Jenkins interact in the Fiji/ImageJ ...) created by dscho
Public outreach: describe how we do things, and why.
10:51 Ticket #1468 (Document the updater changes and the update sites "ImageJ", "Fiji", "LOCI") created by dscho
With the move of the Fiji Updater to ImageJ2, a couple of things have …

09/10/12:

15:46 Ticket #647 (IJ1 Shadows Demo does nothing) closed by curtis
wontfix: Any solution that makes the IJ1 Shadows Demo run as expected would, as …
15:39 Ticket #1467 (Enhance Imglib2 OPS) created by bdezonia
Tickets related to Imglib OPS
12:16 Ticket #1466 (Fix composite ROIs mouse interaction) closed by dscho
fixed

09/07/12:

16:49 Ticket #1381 (Support ColorTable16 images) closed by aivar
fixed: This is working now, in time for imagej-2.0.0-beta4 milestone.
16:34 Ticket #1385 (Improve lookup tables (LUTs)) closed by curtis
fixed: Aivar [changeset:0ebce4f366e48db978018df6e4632422ff1532a4 completed the …
16:33 Ticket #1382 (Refactor ColorTables) closed by curtis
fixed: Done with the [changeset:0ebce4f366e48db978018df6e4632422ff1532a4 merge of …
16:30 Ticket #698 (Incorporate interface ColorTable<T>) closed by curtis
fixed: This work has been completed with the …
15:04 Ticket #1466 (Fix composite ROIs mouse interaction) created by dscho
When selecting a rectangular ROI and calling Edit>Selection>Make Inverse, …
15:00 Ticket #1465 (Support composite ROIs) closed by dscho
fixed: This was fixed after a lot of work in …
14:59 Ticket #1465 (Support composite ROIs) created by dscho
To support subtracting ROIs, we need the concept of regions of interest …
12:51 Ticket #1464 (Overlay Manager help needs help page) created by bdezonia
The Overlay Manager has a help button. It currently loads the web page …
12:47 Ticket #1463 (Legacy Undo needs to be overridden) created by bdezonia
The legacy undo command is not smart enough to recover data in many …
12:47 Ticket #1383 (Refactor Histogram code) closed by aivar
duplicate
12:46 Ticket #1386 (Rework histogram code) closed by aivar
duplicate
11:47 Ticket #1462 (Allow changing the z-order of overlays) created by dscho
The current idea is to bring the selection to the front upon activation; …
11:42 Ticket #1461 (Preferences should only save non-default settings) created by dscho
When settings are unchanged, chances are that the users want to have …
11:27 Ticket #1333 (Add new functionality to showcase IJ2 [plugins]) closed by bdezonia
fixed
11:20 Ticket #1460 (Add new functionality to showcase IJ2 [ndim-data]) created by bdezonia
Some tickets are enhancements to IJ1's code. Implement as possible to show …
11:19 Ticket #1331 (Update legacy layer to fix some plugin incompatibilities [plugins]) closed by bdezonia
fixed
11:15 Ticket #1459 (Update legacy layer to fix some plugin incompatibilities [analysis]) created by bdezonia
There are a class of plugins that require new implementations in IJ2. But …
11:13 Ticket #1340 (Recommended architecture changes [plugins]) closed by bdezonia
fixed
11:09 Ticket #1339 (Make sure rewritten plugins fully support IJ1 functionality [plugins]) closed by bdezonia
fixed
11:05 Ticket #1458 (Make sure rewritten plugins fully support IJ1 functionality ...) created by bdezonia
11:03 Ticket #1345 (Fix obviously failing commands [plugins]) closed by bdezonia
fixed
11:00 Ticket #1457 (Fix obviously failing commands [analysis]) created by bdezonia
Some commands in IJ2 fail in a very apparent fashion. They should be …

09/06/12:

19:00 Ticket #1410 (Refactor imagej.ImageJ.VERSION) closed by dscho
fixed: Curtis did that in 0a0a25bf24464a4b2e6d740094d39ff302407dd5.
16:48 Ticket #1171 (Reimplement some IJ1 plugins [plugins]) closed by bdezonia
fixed
16:14 Ticket #1456 (Reimplement some IJ1 plugins [analysis]) created by bdezonia
Some IJ1 plugins cannot be fully supported by our legacy layer data …
14:25 Ticket #1325 (Fix display UI issues [plugins]) closed by curtis
invalid
14:25 Ticket #1325 (Fix display UI issues [plugins]) reopened by curtis
14:25 Ticket #1291 (Improve menuing system [plugins]) closed by curtis
invalid: Unfortunately, I did not make any progress on this feature. Constituent …
14:17 Ticket #1355 (Create tutorials for the ImageJ API) closed by curtis
fixed: We added two more tutorials: intro-to-imagej-api and add-two-datasets. The …
14:14 Ticket #1455 (Create tutorials for the ImageJ API [docs]) created by curtis
We have a start on some documentation explaining how to use the ImageJ2 …
14:11 Ticket #1052 (Improve plugin infrastructure [plugins]) closed by curtis
fixed: Made some good progress on the plugin infrastructure for beta4 (see …
14:05 Ticket #1325 (Fix display UI issues [plugins]) closed by curtis
wontfix: Unfortunately, I did not make any progress on this feature. Constituent …

09/05/12:

12:39 Ticket #1454 (Make the Updater more robust) closed by dscho
fixed
12:37 Ticket #1454 (Make the Updater more robust) created by dscho
In the course of the final steps of the move from Fiji to ImageJ2, the …

09/04/12:

16:54 Ticket #1323 (Improve core architecture [plugins]) closed by curtis
fixed: All core architecture tasks for beta4 have been completed!
16:51 Ticket #1183 (Finish splitting service interfaces & implementations) closed by curtis
fixed: More service interface/implementation splits: * …
14:30 Ticket #1450 (OptionsChannels allows last fg/bg colors to be edited) closed by bdezonia
fixed: The last fg/bg values are now only stored internally and never displayed.
14:26 Ticket #1453 (Fully document ImageJ 1.x compatibility mode) created by bdezonia
Recently it was decided to support ImageJ 1.x compatibility mode in the …
10:52 Ticket #1452 (Provide an easy way to drive the updater for 3rd party update sites) created by dscho
We want to offer easy uploading for projects such as Bio-Formats. This …

08/30/12:

17:12 Ticket #1445 (Add support for pure java methods of running plugins) closed by bdezonia
fixed: After Curtis made the ContextPlugin class I was able to migrate most of …
15:31 Ticket #1450 (OptionsChannels allows last fg/bg colors to be edited) reopened by bdezonia
Great but now the associated label is not displayed for the colors (run …
14:13 Ticket #1450 (OptionsChannels allows last fg/bg colors to be edited) closed by curtis
fixed: This bug was caused by the message widget not being selected in favor of …
14:02 Ticket #1120 (Merge ij-options into other projects) closed by curtis
fixed: I have filed a new ticket #1451 for the options/prefs/config …
14:02 Ticket #1451 (Consolidate options, prefs and config logic) created by curtis
Currently, we have a package imagej.options with an OptionsService, as …
13:55 Ticket #1212 (Add ConsoleService for handling command line arguments) closed by curtis
fixed: I did an initial cut in …
13:29 Ticket #1450 (OptionsChannels allows last fg/bg colors to be edited) created by bdezonia
In the OptionsChannels dialog it has a couple colors that it displays for …
10:29 Ticket #1416 (Cannot take a composite view to grayscale data via type change) closed by bdezonia
fixed: With commit 6f37d506f9804a7e4eb53896852df2cb238dd7d8 the type changing …
09:50 Ticket #1449 (Utilize info from ImageJ context manifest in About dialog) created by bdezonia
Recently system information was made available through the …

08/29/12:

16:01 Ticket #921 (Application Framework Generalization) closed by curtis
fixed: I worked on this ticket on the extract-version branch, which is …
15:49 Ticket #839 (Some plugins names do not match their labels) closed by bdezonia
fixed: Situation improved with large commit …
13:51 Ticket #1448 (Enhance Salt and Pepper dialog) created by bdezonia
The salt and peper dialog currently allows the user to specify min/max …
13:48 Ticket #1096 (SaltAndPepper issue) closed by bdezonia
fixed: With commit 9371d6d49db8c81bcde91c9bfc233ba2a551b5b3 the user can choose a …
13:28 Ticket #1447 (Minimize min/max computations during autoscaling) closed by bdezonia
fixed: Fixed with commit c773314e9ef749f8046d941fa90d45afc0f3ccac
13:27 Ticket #1447 (Minimize min/max computations during autoscaling) created by bdezonia
DefaultDatasetView::autoscale() currently computes mins and maxes once for …
13:23 Ticket #1446 (Remove AWT dependency from ij-data) closed by bdezonia
fixed: Fixed with commit 0eb6d4304fb3b044af8f281dcc314ef961712242
13:22 Ticket #1446 (Remove AWT dependency from ij-data) created by bdezonia
After some redesign to support RenderingServices the ColorTables class is …
11:41 Ticket #1034 (Relocate DrawingTool) closed by bdezonia
fixed: After fixing ticket #1036 I think DrawingTool and FloodFiller are fine in …
10:43 Ticket #1036 (Implement a RenderingService) closed by bdezonia
fixed: Fixed with commit 5fff913c1c73acfa18a72affed633f50f004f548
09:43 Ticket #1445 (Add support for pure java methods of running plugins) created by bdezonia
After some discussion it was decided that the plugin service will not run …

08/28/12:

18:07 Ticket #620 (Rework ClassUtils utility class) closed by dscho
fixed: We added loadClass, hasClass and getLocation methods that take …
17:07 Ticket #1444 (Plugin field values do not always resolve correctly) closed by curtis
wontfix: After a discussion between bdezonia, dscho and myself, we decided not to …
16:06 Ticket #1444 (Plugin field values do not always resolve correctly) created by bdezonia
If you do code like this: FindEdges edgeFinder = new FindEdges(); …
14:47 Ticket #1443 (Allow plugin service to run intances of RunnablePlugin) closed by curtis
fixed: Should now be possible with …
14:31 Ticket #1443 (Allow plugin service to run intances of RunnablePlugin) created by bdezonia
Currently in IJ2 I can do this: HashMap<String,Object> inputMap = new …
13:13 Ticket #915 (ColorTableHarmonizer needs to be updated) closed by bdezonia
fixed: Testing shortly before beta 4 and the workaround in Marmonizer no longer …
12:59 Ticket #1442 (Support headless plugins) created by bdezonia
Before the final release of 2.0 we should comb over existing plugins and …
12:55 Ticket #1328 (Make plugins headless friendly) closed by bdezonia
fixed: With commit ba3b83f9a4c920e2f3e1c24566c8614190579513 many plugins improved …
10:35 Ticket #1310 (Utilize new Cancelable plugin architecture) closed by bdezonia
fixed: Fixed with commit 230e03519a62dd822aa0c816a50d53679d8169b0

08/27/12:

15:43 Ticket #827 (Fix Event Handling in JHotDrawImageCanvas) closed by curtis
fixed: The point tool now reports status in …
15:16 Ticket #695 (invert broken) closed by bdezonia
fixed: The legacy mode code is in place with this commit: …
15:09 Ticket #1441 (Angle tool broken) created by curtis
The angle tool in ImageJ1 requires two clicks to define an angle. The …
15:07 Ticket #1440 (Fix broken ROI tools) created by curtis
Some of the ROI tools do not work properly, or have limitations that need …
14:43 Ticket #1439 (Improve zooming behavior (2.0.0-final)) created by curtis
There are currently several bugs and limitations in how zooming behaves. …

08/24/12:

15:52 Ticket #1437 (SelectView exception thrown : case 2) closed by bdezonia
fixed: Final improvement with commit 906964223831383106563c3489f9c13d1c1b6c91
15:13 Ticket #1435 (SelectView exception thrown : case 1) closed by bdezonia
fixed: Fixed by commit 755f66e9bdaceab3a5a1f09f4a31fc8939038ee4
13:55 Ticket #1436 (SelectView does not place new overlay in correct display plane) closed by bdezonia
fixed: Fixed with commit 14a92eaeb33b8b54d4f748321a1b0119af76a1c4
12:58 Ticket #1438 (Make sure calibration values are maintained) closed by bdezonia
fixed: Further code inspection seems to imply we are maintaining calibration …
12:32 Ticket #1438 (Make sure calibration values are maintained) created by bdezonia
Some commands restructure data. Make sure that the calibration metadata is …
11:56 Ticket #1437 (SelectView exception thrown : case 2) created by bdezonia
Open organ of corti Run Select View Plane 0 is now totally selected Change …
11:51 Ticket #1436 (SelectView does not place new overlay in correct display plane) created by bdezonia
Open Organ Of Corti Set Z slider to slice 5. Run Edit > Selection > Select …
11:42 Ticket #1435 (SelectView exception thrown : case 1) created by bdezonia
Open boats and draw a random rectangle overlay that does not fill screen …
11:40 Ticket #1434 (IJ1 does not understand IJ2's definition of the current selection) created by bdezonia
Open Boats. Draw one rectangle overlay. Run Plot Profile. success Draw a …
11:36 Ticket #1433 (Plugins that return overlays can throw exceptions) created by bdezonia
During a test implementation of the SelectView plugin I had the plugin …
11:31 Ticket #1320 (Select All not working) closed by bdezonia
fixed: With commit 64bd98afd200e10c90b9ac5b2a018fe29e2f9322 replaced Select All …

08/23/12:

15:24 Ticket #1432 (Implement a pure IJ2 measurement facility) created by bdezonia
Once we have created an IJ2 version of the results table we'll want to …
14:44 Ticket #1065 (Allow AddAxis to specify an axis size of 1) closed by bdezonia
wontfix: Note that legacy layer removes axes of trivial size. Otherwise all IJ1 …
14:00 Ticket #1431 (Display range should never be 0) created by bdezonia
Theres an issue with default display ranges. Create a new image filled …
13:31 Ticket #924 (Duplicate plugin not completely successful) closed by bdezonia
fixed: Fixed with commit 0363f99cb7263d7dad8fb5bdb2c80181bd45a0c1
12:36 Ticket #1255 (Duplicate command different than IJ1) closed by bdezonia
fixed: This was fixed recently with the creation of the SamplerService and an …
12:33 Ticket #1430 (Image Calculator does not reuse LUTS) created by bdezonia
If you make a 1-bit black and white image and run Image Calculator between …
12:16 Ticket #1414 (Type changing can throw an exception) closed by bdezonia
fixed: Fixed with commit cb7f57a892c055adffa3a3a853538151eb1b408f
10:42 Ticket #1429 (New Image can cover app frame) created by bdezonia
The creation of new images can cover the app frame. Perhaps we should make …

08/22/12:

17:17 Ticket #1390 (Image > Duplicate does not handle errors well) closed by bdezonia
fixed: Very much improved with commit afb645d3d43f60af605c7e3a423dd76571c5c076

08/21/12:

14:31 Ticket #1428 (Consider changing Image Type menu behavior) created by bdezonia
As new ImgLib types are created the current way we handle the Image Type …
09:41 Ticket #1427 (Polygon tool broken) created by bdezonia
The polygon tool is not working correctly. Draw a polygon by clicking …

08/20/12:

15:58 Ticket #1420 (Test images don't survive IJ2->IJ1->IJ2 round trip) closed by bdezonia
fixed
15:58 Ticket #1424 (Signed 64-bit images don't survive IJ2->IJ1->IJ2 round trip) closed by bdezonia
fixed: Fixed with commit 6c6327b2c5bd75ea3a3aa2cc4e027e833e804567
15:57 Ticket #1423 (Unsigned 32-bit images don't survive IJ2->IJ1->IJ2 round trip) closed by bdezonia
fixed: Fixed with commit 6c6327b2c5bd75ea3a3aa2cc4e027e833e804567
15:09 Ticket #1422 (Signed 16-bit images don't survive IJ2->IJ1->IJ2 round trip) closed by bdezonia
fixed: IJ2 was setting min max in ImagePlus to -32768,32767. But IJ1 truncs all …
14:08 Ticket #1426 (Implement some type of screen capture service) closed by bdezonia
fixed: The ScreenCaptureService was added recently to core and an AWT/Swing …
14:07 Ticket #1426 (Implement some type of screen capture service) created by bdezonia
The IJ1 commands Capture Image and Capture Screen capture screen pixel …
14:05 Ticket #1425 (Implement some type of duplication service) closed by bdezonia
fixed: Recently the SamplerService was added for this purpose. The DuplicateImage …
14:04 Ticket #1425 (Implement some type of duplication service) created by bdezonia
We should provide a standard way for users to duplicate data from existing …
13:58 Ticket #1421 (Signed 8-bit test images don't survive IJ2->IJ1->IJ2 roundtrip) closed by bdezonia
fixed: Fixed with commit f4fec78f8e4431dea10afd9c0cf2a8349a3f128d
13:07 Ticket #1274 (Capture Image plugin does not work) closed by bdezonia
fixed: With commit ef6c7631b0fa0d0bb93fd8c3f20973b9505728b1 the rewrite of the …

08/17/12:

15:29 Ticket #1424 (Signed 64-bit images don't survive IJ2->IJ1->IJ2 round trip) created by aivar
Create a test ramp image (File\New\Image) with signed 64-bit, the image …
15:26 Ticket #1423 (Unsigned 32-bit images don't survive IJ2->IJ1->IJ2 round trip) created by aivar
Create a test ramp image (File\New\Image) with unsigned 32-bit, the image …
15:18 Ticket #1422 (Signed 16-bit images don't survive IJ2->IJ1->IJ2 round trip) created by aivar
Create a test ramp image (File\New\Image) with signed 16-bit, the image …
15:08 Ticket #1421 (Signed 8-bit test images don't survive IJ2->IJ1->IJ2 roundtrip) created by aivar
Create a test ramp image (File\New\Image) with signed 8-bit, the image …
15:03 Ticket #791 (Make input widgets discoverable) closed by curtis
fixed: Work complete! See [changeset:e61825b74eda051d6c445d8dcdee48a33b8befa5
15:02 Ticket #1420 (Test images don't survive IJ2->IJ1->IJ2 round trip) created by aivar
Creating test ramp images (File\New\Image) the images look fine with a …
12:14 Ticket #1419 (Make DefaultPlatform.open() return quickly, always) created by dscho
On MacOSX and Windows, open(url) will return immediately. On Linux, …

08/16/12:

14:47 Ticket #1418 (Duplicate plugin does not set display ranges) closed by bdezonia
fixed
14:47 Ticket #1418 (Duplicate plugin does not set display ranges) created by bdezonia
Open Organ Of Corti and run Image :: Duplicate. Data is correct but …
12:44 Ticket #1288 (Implement pure IJ2 version of Capture Image) closed by bdezonia
duplicate: This is a duplicate of #1274
12:28 Ticket #1374 (Image :: Duplicate does not always work) closed by bdezonia
fixed
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