Timeline


and

08/10/12:

18:43 Ticket #1386 (Rework histogram code) created by aivar
Consolidate histogram code and fix bugs. [Closed as duplicate of #1203]
18:38 Ticket #1385 (Improve lookup tables (LUTs)) created by aivar
Refactor LUTs to better support SLIM Plugin and fix bugs in the code.
18:35 Ticket #1384 (Create ImageStatistics class) created by aivar
Need to get statistics on an image with the minimal number of passes …
18:33 Ticket #1383 (Refactor Histogram code) created by aivar
There are multiple implementations of histograms in ImgLib2. Refactor …
18:30 Ticket #1382 (Refactor ColorTables) created by aivar
All calls using LUTs should go through ColorTable, which will hide the …
18:28 Ticket #1381 (Support ColorTable16 images) created by aivar
Certain image formats that BioFormats supports allow for 16-bit color …
14:35 Ticket #1380 (Allow combination of graphs and UI dialogs) created by aivar
A common UI pattern is to show a graph with some UI embellishment below. …
11:20 Ticket #1379 (Support for colorized grayscale images) created by aivar
SLIM Plugin uses a colorized grayscale image to present fitted values. …

08/07/12:

18:29 Ticket #1378 (Move ij.jar from Fiji's Update Site to ImageJ's) closed by dscho
fixed: The Jenkins job was changed after the necessary changes to the Updater …
18:28 Ticket #1378 (Move ij.jar from Fiji's Update Site to ImageJ's) created by dscho
It does not make much sense for Fiji to have its own ij.jar, overriding …
18:28 Ticket #1377 (Updater: fix the command-line for headless operations) closed by dscho
fixed: The patch series fixing this issue has been finalized in …
18:27 Ticket #1377 (Updater: fix the command-line for headless operations) created by dscho
In cronjobs or even Jenkins jobs, we would like to be able to use the …
14:43 Ticket #1376 (Convert Uploader annotation to a Plugin type) created by curtis
As part of the effort to standardize discovered elements to use ImageJ's …
12:32 Ticket #1375 (Make a tutorial: how to port my plugin) created by bdezonia
We should make a tutorial that shows how to port a simple IJ1 plugin. For …

08/06/12:

16:41 Ticket #1374 (Image :: Duplicate does not always work) created by bdezonia
After putting in place the new SamplerService and a revamped Duplicate …
15:24 Ticket #1372 (Fix Updater's "Break the dependency" button) closed by dscho
fixed: Fixed in 761025256dde8ae7afe6b2a11f5d2a41e4ac3f8c. Even better, …
13:13 Ticket #1373 (Make tutorials to help people get started writing tools plugins) created by dscho
Interactive tools are one of the most powerful things Fiji could offer in …
11:38 Ticket #1372 (Fix Updater's "Break the dependency" button) created by dscho
It has been reported both by Jean-Yves Tinevez and Gavin Price that the …
10:19 Ticket #1371 (Detect when ImageJ.app/ is in C:\Program Files\ on Windows and the current ...) created by dscho
Windows is a funny platform, with its ACLs it is not fitting into the …

08/03/12:

17:01 Ticket #1370 (Use IJ2 for main SLIM Plugin UI Panel display) created by aivar
Currently SLIM Plugin uses basic Swing for its UI. Would be better to use …
16:49 Ticket #1369 (This feature was a duplicate) created by aivar
Take concepts from SLIM Plugin and generalize them in IJ2.
14:19 Ticket #1368 (Cannot convert an RGB image into grayscale) created by bdezonia
Between beta 3 and beta 4 in the ij2 devel mailing list Gabriel Landini …
14:10 Ticket #1367 (Minimize the number of images that get opened by the legacy layer) created by bdezonia
Between beta 3 and beta 4 in the ij2 developer mailing list Gabriel …
13:57 Ticket #1366 (Reimplement some IJ1 plugins [ndim-data]) created by curtis
Some IJ1 plugins cannot be fully supported by our legacy layer data …
13:44 Ticket #1365 (Improve support for ROIs, segmentation and labeling [analysis]) created by curtis
Continue refining support for ROIs, segmentation and labeling in ImageJ.
13:42 Ticket #1364 (Provide developer level documentation of OPS) created by bdezonia
We should provide material to familiarize developers with OPS. We could …
12:28 Ticket #1363 (Updater: port the command-line version from the Fiji Updater) closed by dscho
fixed: This was finalized in commit 795762cb523364fb3fbc0ba706d25dc890d1c1e3.
12:28 Ticket #1363 (Updater: port the command-line version from the Fiji Updater) created by dscho
The command-line version of the Fiji Updater allows things such as …
12:24 Ticket #1362 (Updater: re-implement the "Show changes" button from the Fiji Updater) closed by dscho
fixed: The initial version of the code was finalized in …
12:23 Ticket #1362 (Updater: re-implement the "Show changes" button from the Fiji Updater) created by dscho
Fiji had the "Show changes" button in the updater which allowed the …
12:18 Ticket #1361 (Updater: download and use the ssh uploader when needed) closed by dscho
fixed: This was fixed in 496cefd19f868ca759838ebe96587184c59474f0.
12:18 Ticket #1361 (Updater: download and use the ssh uploader when needed) created by dscho
Since the switch from the Fiji Updater to the ImageJ Updater, Fiji no …
12:14 Ticket #1360 (Updater: handle multiple file versions in jars/) closed by dscho
fixed: This was fixed in 7587dad24cbb5cf91dc17ee066643b05fd1831b0.
12:14 Ticket #1360 (Updater: handle multiple file versions in jars/) created by dscho
If a user has, say, jfreechart-1.0.13.jar and jfreechart-1.0.14.jar in the …
12:07 Ticket #1359 (Updater: mark obsolete files for uninstall by default) closed by dscho
fixed: This was fixed in 578b8a1fdfc1fbdb41721b27d6db42cf755b2bab. In the course …
12:02 Ticket #1359 (Updater: mark obsolete files for uninstall by default) created by dscho
At some stage, long ago, during the multiple update site changes, the …
10:45 Ticket #1358 (Fix display UI issues [analysis]) created by curtis
There are still some bugs in the display architecture, which must be …
10:40 Ticket #1357 (Improve plugin infrastructure [ndim-data]) created by curtis
This ticket is for improvements to the plugin infrastructure slated for …
10:21 Ticket #1356 (Improve menuing system [compatibility]) created by curtis
The menu system has some limitations and bugs that must be resolved. See …
10:13 Ticket #1355 (Create tutorials for the ImageJ API) created by curtis
We have a start on some documentation explaining how to use the ImageJ2 …

08/01/12:

11:23 Ticket #1137 (Clear/Clear Outside misbehaving) closed by bdezonia
fixed
11:22 Ticket #1137 (Clear/Clear Outside misbehaving) reopened by bdezonia

07/31/12:

15:27 Ticket #1337 (Stack To Images can hang IJ2) closed by bdezonia
fixed
15:18 Ticket #1067 (Always update IJ1 with IJ2 colors) closed by bdezonia
fixed: Most of this ticket had been handled previously. The event and context …
15:15 Ticket #1282 (Edit >> Cut may use wrong fill value) closed by bdezonia
fixed: Fixed with commit b48302ce10ab1c5f9ba55b05271220b60917f444. Every time a …

07/30/12:

15:00 Ticket #1353 (Image > Stacks > Tools > Insert reports image titles badly) closed by bdezonia
fixed: Fixed with commit 49f313ff9e2308eb1618f644d1661d28be142aaa
12:30 Ticket #1286 (Changes in Image >> Properties not always reflected in results) closed by bdezonia
fixed: Fixed with commit 17c72a9146d619b8bcdd590f93f95e3c0986bfd5
10:42 Ticket #1354 (Implement Help>Start Legacy ImageJ) created by dscho
Even if our legacy service is already quite good and will get even better, …
10:41 Ticket #1286 (Changes in Image >> Properties not always reflected in results) reopened by bdezonia
Reopening. It is still happening. Previous debug effort showed that …
10:37 Ticket #1286 (Changes in Image >> Properties not always reflected in results) closed by bdezonia
fixed: After recent changes to the legacy layer this bug appears to be fixed.

07/27/12:

17:17 Ticket #1279 (Edit >> Selection >> Enlarge leaves mask behind) closed by bdezonia
fixed: After recent legacy layer changes this appears to be working
17:05 Ticket #1297 (Image > Stacks > Tools > Combine broken) closed by bdezonia
wontfix: Verified that IJ1 is returning X, Y, Z dataset. Code in StackWindow …
16:19 Ticket #1353 (Image > Stacks > Tools > Insert reports image titles badly) created by bdezonia
Run this command on two images that have the same title as created by IJ2 …
16:16 Ticket #1298 (Image > Stacks > Tools > Insert broken) closed by bdezonia
fixed: After recent changes to legacy layer this is now working. Reporting the …
16:11 Ticket #1304 (Image > Rotate issues) closed by bdezonia
fixed: After recent changes to legacy layer this command is now working
16:09 Ticket #1305 (Image > Transform > Bin loses composite status) closed by bdezonia
fixed: Fixed with commit 9eca4dfc911f3cc0279465f63ab9fce12c53c0db
13:35 Ticket #1295 (Exception error in Plot Z Profile) closed by bdezonia
fixed: Fixed with commit fef45e2d9d69dcc8d0995f39fff442ef6c51d7e5 Again another …
10:39 Ticket #1294 (3d Project command results not like IJ1) closed by bdezonia
fixed: Fixed with commit 49489b3eff34fac467510569210668a5dd7bf032. We now update …

07/26/12:

15:43 Ticket #1137 (Clear/Clear Outside misbehaving) closed by bdezonia
fixed: Fixed pixel munging error with commit …
13:13 Ticket #1352 (Match IJ1 drawing tool conventions) created by bdezonia
Wayne Rasband reported in the ImageJ mailing list: In the ImageJ 1.47 …

07/24/12:

17:38 Ticket #1021 (Make Fiji's Updater use IJ2's Updater) closed by dscho
fixed: As of 535685b8dd4e607df39450f48b6f045e9908cab3 (and in Fiji …
15:17 Ticket #1277 (Dragging sliders do not reach limits) closed by bdezonia
fixed: The fix for #1346 also handles this issue
15:14 Ticket #1346 (Image label not up to date) closed by bdezonia
fixed: With commit fc0fff575dfc4a2dd04b9fe52ad8fcb6594d3b26 this bug is fixed. We …
12:17 Ticket #1314 (Enhance OPS equation language) closed by bdezonia
fixed: With imglib commit f9d69e03a2c152aa0384e2cafdeb1079caeaa863 references to …

07/23/12:

10:58 Ticket #1172 (Reimplement some IJ1 plugins (beta 4)) closed by bdezonia
duplicate

07/20/12:

13:30 Ticket #1351 (Force m2e to build .jar artifacts again) closed by dscho
fixed: Fixed in 4d1d0afe2da25d207c2448a6294c37dd580acad0. (Corresponding commit …
13:30 Ticket #1350 (Force m2e to respect our buildnumber settings) closed by dscho
fixed: Fixed in 4d1d0afe2da25d207c2448a6294c37dd580acad0. (Corresponding commit …

07/19/12:

21:59 Ticket #1351 (Force m2e to build .jar artifacts again) created by dscho
Just like ticket #1350, the maven-jar-plugin is no longer run by default. …
21:54 Ticket #1350 (Force m2e to respect our buildnumber settings) created by dscho
At some stage, the Implementation-Build: tag in the manifests of our .jar …
21:51 Ticket #1349 (Improved user experience [2.1.0]) created by dscho
ImageJ2 not only gives us the chance to do improve a lot "under the hood", …
21:49 Ticket #1249 (Improve ImgOpener usage of generics) closed by dscho
fixed: Steffi resolved this issue this week: it is now possible (at least on a …
21:41 Ticket #1348 (Assorted infrastructure enhancements) created by dscho
This entails improvements to the build but also work on Jenkins and our …
21:17 Ticket #1347 (Improve the Updater [analysis]) created by dscho
In general, the Updater is quite good, but due to a few changes we wanted …
21:14 Ticket #1206 (Teach ClassLauncher about versioned files) closed by dscho
fixed: I actually fixed this long ago, on May 8, in commit …

07/18/12:

14:58 Ticket #1346 (Image label not up to date) created by bdezonia
Create a new image Add a channel axis (size 9) Image displays fine Now …
14:55 Ticket #586 (Exception thrown on type convert to RGB Color) closed by bdezonia
fixed: Testing this post beta 3 and there are no longer any apparent issues

07/17/12:

17:17 Ticket #1104 (Cannot open XML files for TrakEM2) reopened by bdezonia
Albert writes: create trakem2 project, push s to save it into an xml …
16:36 Ticket #1345 (Fix obviously failing commands [plugins]) created by bdezonia
Some commands in IJ2 fail in a very apparent fashion. They should be …
16:26 Ticket #1104 (Cannot open XML files for TrakEM2) closed by bdezonia
invalid: I have heard nothing back. Albert, I am closing this ticket as invalid. If …
16:10 Ticket #907 (Some legacy plugins can't harmonize correctly) closed by bdezonia
wontfix: For quite some time the IJ1 Color Picker has no longer been supported in …
16:00 Ticket #611 (Combine Add Axis with Add Data (and Delete cases also)?) closed by bdezonia
wontfix: I think the current implementation (the four combos of Add/Delete …
15:41 Ticket #1344 (Persist user interface state) created by bdezonia
Some tickets note the need to persists certain IJ2 settings such that …
15:36 Ticket #1343 (Test various features of IJ2 [docs]) created by bdezonia
This feature ticket is for organizing tasks that mainly have a component …
14:56 Ticket #1342 (Closely model IJ1 user interface conventions) created by bdezonia
Some IJ1 user interface conventions of IJ1 have not yet been ported into …
14:28 Ticket #1341 (Improve color support [analysis]) created by bdezonia
Note that currently this ticket does not refer to support of new color …
14:17 Ticket #1340 (Recommended architecture changes [plugins]) created by bdezonia
There are a number of tickets that mainly affect the current architecture …
14:12 Ticket #1339 (Make sure rewritten plugins fully support IJ1 functionality [plugins]) created by bdezonia
There are a class of IJ1 plugins that have been rewritten in a pure IJ2 …
14:05 Ticket #1338 (Support existing IJ1 menu commands when possible) closed by bdezonia
duplicate
14:04 Ticket #1338 (Support existing IJ1 menu commands when possible) created by bdezonia
There are a number of IJ1 menu commands that are broken but do not require …
13:27 Ticket #438 (Problems with loading big images) closed by bdezonia
fixed: Note that testing with beta 2 and beta 3 it loads fine in about 20 - 25 …
12:44 Ticket #1337 (Stack To Images can hang IJ2) created by bdezonia
open Bat Cochlea Renderings Image > Stacks > Tools > Make Substack …
12:41 Ticket #769 (Stack to Images processes slices out of order) closed by bdezonia
fixed: Once the menubar duplication code was removed these windows are now in …
11:53 Ticket #1336 (Drawing Tools interact with Overlays) created by bdezonia
In the ImageJ mailing list Rob van 't Hof reported the following issue …
11:44 Ticket #1335 (Cropping results in exception and does not change data) created by bdezonia
In the ImageJ maling list Rob van 't Hof reported the following issue with …
11:29 Ticket #1334 (Plugins getting run twice) created by bdezonia
In the ImageJ mailing list Glen McDonald reported the following issue with …

07/16/12:

15:39 Ticket #1233 (IJ1 version of flatten not quite working) closed by bdezonia
fixed: We have a pure version of flatten in beta3
15:32 Ticket #971 (Need programatic access for keyboard modifiers) closed by bdezonia
fixed: We added a KeyboardService during beta 3.
15:30 Ticket #1333 (Add new functionality to showcase IJ2 [plugins]) created by bdezonia
Some tickets are enhancements to IJ1's code. Implement as possible to show …
14:42 Ticket #1332 (Test 3d filter support) created by bdezonia
Very recently IJ1 added some 3d filters to the filters menu. Test that …
14:12 Ticket #1331 (Update legacy layer to fix some plugin incompatibilities [plugins]) created by bdezonia
There are a class of plugins that require new implementations in IJ2. But …

07/13/12:

22:37 Ticket #659 (Prototype for Bio-Formats Ice bindings) closed by curtis
moved: Migrated to  #9358.
22:23 Ticket #657 (Create jar2ice and icewrap Maven plugin) closed by curtis
moved
22:23 Ticket #657 (Create jar2ice and icewrap Maven plugin) reopened by curtis
22:22 Ticket #747 (Allow a plugin parameter to be both an input & an output) closed by curtis
fixed: This has actually been done since last September! See …
21:59 Ticket #77 (Get NetID authentication working for Microscopy web site) closed by curtis
moved: Migrated to  #719.
15:18 Milestone imagej2-b3-headless completed
Third beta release, focusing on support for headless operation.
15:18 Ticket #1231 (Create a user story for the release [headless]) closed by curtis
fixed: Blog entry [ http://developer.imagej.net/2012/07/13/imagej-v200-beta3

07/12/12:

16:59 Ticket #1051 (Improve plugin infrastructure [headless]) closed by curtis
fixed: Remaining plugin infrastructure issues migrated to #1052.
16:54 Ticket #1098 (Harvested dialogs can have initialization problems) closed by curtis
fixed: The line width always resetting to 1 was a bug unrelated to input …
12:43 Ticket #1330 (Expose and utilize display range API) created by bdezonia
Many plugins (such as the Process > Math ones) do not change the display …
12:40 Ticket #1329 (Display range initialization for float images is crazy) created by bdezonia
Make a new 32-bit float image. Open Adjust Brightness/Contrast. The min …
12:38 Ticket #1315 (Display range for float images not automatically set) closed by bdezonia
fixed: There are two issues here: 1) running plugins does not automatically …
12:23 Ticket #1328 (Make plugins headless friendly) created by bdezonia
There are many plugins that would run well headlessly given their …
12:14 Ticket #1327 (Number widget cannot select negative numbers) closed by curtis
wontfix: This is normal behavior on all three major OSes: double-clicking selects …
11:51 Ticket #1327 (Number widget cannot select negative numbers) created by bdezonia
Open Brightness/Contrast plugin In the min field type -100. Now double …
11:40 Ticket #1318 (Process > FFT > Swap Quadrants is ineffective) closed by bdezonia
fixed
11:14 Ticket #1162 (Improve menuing system [headless]) closed by curtis
fixed: Remaining menu system issues migrated to #1291.
11:02 Ticket #1242 (Fix display UI issues [headless]) closed by curtis
fixed: Remaining display UI issues migrated to ticket #1325.
10:59 Ticket #1185 (Improve zooming behavior [headless]) closed by curtis
fixed
10:56 Ticket #1307 (Change icons of unimplemented plugins) closed by bdezonia
fixed: Done with bricks icon (in core resources)
10:54 Ticket #1187 (Initial scale off a little sometimes) closed by curtis
fixed: I believe this is fixed as of the …
10:50 Ticket #798 (Zooming out can result in drift) closed by curtis
fixed: As of the [changeset:1bb013f37c792a669fd73e8e319a2cf21a5ac21a fix-zoom …
10:45 Ticket #1324 (Cannot correctly Make Binary on a float image (thresholding)) closed by bdezonia
fixed: This has nothing to do with thresholding. There was a bug in …
10:41 Ticket #1326 (Improve zooming behavior) created by curtis
There are currently several bugs and limitations in how zooming behaves. …
10:37 Ticket #1138 (Crop leaves old image in window) closed by curtis
fixed: I cannot duplicate this problem anymore. Probably fixed due to the …
10:34 Ticket #1325 (Fix display UI issues [plugins]) created by curtis
There are some bugs remaining from the recent headless display refactoring …
10:33 Ticket #1145 (Add axis is not adding sliders) closed by curtis
fixed: As of the [changeset:1bb013f37c792a669fd73e8e319a2cf21a5ac21a fix-zoom …
10:25 Ticket #826 (Crop does not always resize window) closed by curtis
duplicate: Duplicate of #1101.
09:52 Ticket #1324 (Cannot correctly Make Binary on a float image (thresholding)) created by bdezonia
Open bridge, change type to 32-bit float, and run Make Binary. All pixels …
09:50 Ticket #1209 (Improve core architecture [headless]) closed by curtis
fixed
09:49 Ticket #1323 (Improve core architecture [plugins]) created by curtis
This ticket is for improvements to the core ImageJ2 architecture slated …
09:48 Ticket #1311 (Process > Binary > Make Binary sometimes fails) closed by bdezonia
fixed: The issue where a float version of the bridge is all 255 is an issue with …

07/11/12:

16:17 Ticket #1317 (IJ2 cannot handle file created by IJ1) closed by curtis
invalid: The NaN issue was due to a recent change to PixelProbe to handle …
15:14 Ticket #1322 (Analyze > Tools > Curve Fitter is missing functionality) created by bdezonia
In IJ1 the Curve Fitter plugin throws up a graphical view of a curve fit. …
15:00 Ticket #1321 (Test the Analyze > Gels menu) created by bdezonia
The Analyze > Gels menu is lightly tested and so far behavior is …
14:44 Ticket #1320 (Select All not working) created by bdezonia
Open an image like Boats. Run Edit > Selection > Select All. Run Analyze > …
14:13 Ticket #1319 (IJ2 probe does not respect "Invert Y Coordinates" setting) created by bdezonia
The "Invert Y Coordinates" setting of Analyze > Set Measurements is not …
13:06 Ticket #1318 (Process > FFT > Swap Quadrants is ineffective) created by bdezonia
Use the attached file In IJ1 running Swap Quadrants works In IJ2 running …
12:50 Ticket #1317 (IJ2 cannot handle file created by IJ1) created by bdezonia
Attached file loads and displays correctly in IJ1. It was created in IJ1 …
12:32 Ticket #1316 (Example where Brightness/Contrast issues are apparent) created by bdezonia
Use the attached file for a mask in the Process > FFT > Custom Filter …
11:55 Ticket #1315 (Display range for float images not automatically set) created by bdezonia
Create new 512x512 32-bit float image that is all zero. Run Process > Math …
11:51 Ticket #1314 (Enhance OPS equation language) created by bdezonia
In IJ1 the Process > Math > Macro language defines a couple helper …
11:28 Ticket #1313 (Pencil tool not working at extremes) created by bdezonia
Make a new 1-bit 5x5 image filled with 0. Set Options > Channels fg to 1 …
11:21 Ticket #1312 (Process > FFT > Bandpass Filter fails on some images) created by bdezonia
Bandpass Filter works for some images (such as Boats). But running with …
10:33 Ticket #1311 (Process > Binary > Make Binary sometimes fails) created by bdezonia
Process > Binary > Make Binary does not work the same as IJ1 for all image …
10:23 Ticket #1310 (Utilize new Cancelable plugin architecture) created by bdezonia
Recently a Cancelable facility was added to the plugin architecture that …
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