Timeline


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05/21/12:

11:33 Ticket #1193 (Improve overlay manager architecture) created by bdezonia
Currently there is a partial implementation of an IJ2 ROI Manager called …
11:17 Ticket #1168 (Can no longer set background color using picker tool) closed by bdezonia
fixed: In commit c1cf7fb63d05bdfbe11e3fbfd2b7b4ef8c47a11b used standard methods …

05/18/12:

17:59 Ticket #1191 (The ImageJ launcher opens a console window when the environment variable ...) closed by dscho
fixed: Fixed in …
16:51 Ticket #868 (Verify waitForThreads() code in LegacyPlugin is safe) closed by bdezonia
fixed: Remaining issues with this ticket now hatched in #1192. Closing.
16:50 Ticket #1192 (Lock images when running legacy plugins) created by bdezonia
It would be useful to lock images during the time a legacy plugin is being …
16:48 Ticket #1154 (Simultaneous image openings are problematic) closed by bdezonia
fixed: With commit 4cceb5569b8f660c6be89cd209f1ae8a6b65a54c long thread waits …
16:28 Milestone imagej2-b2-bugfixes completed
Second beta release, focused on addressing critical issues from …
15:31 Ticket #1191 (The ImageJ launcher opens a console window when the environment variable ...) created by dscho
As the ImageJ launcher on Windows opens a console when something is …
15:26 Ticket #1190 (Drawing tools are misaligned on panned/zoomed images) created by curtis
Open Blobs, zoom in, try to draw with paintbrush. Or just size the window …
15:05 Ticket #1189 (Adding an overlay resets image zoom) created by curtis
Adding or removing an overlay causes a display rebuild operation, which …

05/17/12:

14:23 Ticket #1188 (Menubar sometimes inactive) created by bdezonia
Using the final candidate for beta 2 on Linux and OpenJDK I have a problem …
14:16 Ticket #1187 (Initial scale off a little sometimes) created by bdezonia
Testing on Linux with my small screened laptop. Sometimes images show up …
14:05 Ticket #1142 (Sometimes images display with zero height) closed by bdezonia
fixed: This appears to be fixed by the merge of fix-displays
13:57 Ticket #1186 (Zooming does not center on mouse cursor) created by curtis
Prior to the recent display refactoring, using the mouse wheel with the …
13:52 Ticket #1185 (Improve zooming behavior [headless]) created by curtis
There are currently several bugs and limitations in how zooming behaves. …
13:47 Ticket #1060 (Zoom out does not pack() correctly) reopened by bdezonia
Unfortunately I can reproduce the bouncing between scale problem on my …
13:34 Ticket #1167 (New Image fails to appear) closed by curtis
fixed
13:33 Ticket #1060 (Zoom out does not pack() correctly) closed by curtis
fixed: I believe this is fixed with the recent display fixes, culminating in …
13:12 Ticket #1181 (Some display classes refer to abstract classes directly) closed by curtis
fixed: (In [5495]) Split Swing-specific viewer logic to an interface This allows …

05/16/12:

14:47 Ticket #740 (Stack to Images slow) closed by bdezonia
fixed: Debugging into JHotDraw it seems that nothing is taking extra time. Image …
13:38 Ticket #1184 (Memory options crashes) closed by bdezonia
fixed: Fixed with 4e4518725f61bc5e01c00678318750cf4fb4fad6. Apparently the return …
13:30 Ticket #1184 (Memory options crashes) created by bdezonia
Open OptionsMemoryAndThreads. An exception is thrown. This might only …
10:41 Ticket #1183 (Finish splitting service interfaces & implementations) created by curtis
Many services now have separate interface and default implementation …
10:31 Ticket #1182 (Decide on how to implement menus) created by bdezonia
Currently menus are supported differently by platform. On the Mac they are …

05/15/12:

17:09 Ticket #838 (Better persistence behavior for unsupported object types) closed by curtis
fixed
13:34 Ticket #1181 (Some display classes refer to abstract classes directly) created by bdezonia
The following four classes refer to abstract classes directly rather than …
13:00 Ticket #635 (Event focus rules should be more flexible) closed by curtis
fixed: I agree with Grant that the consume()/isConsumed() methods should address …
12:14 Ticket #1020 (Use ItemIO.BOTH where relevant in plugins) closed by bdezonia
fixed: The remaining portions of this ticket have been hatched as new ticket …
12:13 Ticket #1180 (Eliminate redundant update events) created by bdezonia
Many plugins take a display as a parameter but munge it's associated …

05/14/12:

15:37 Ticket #1179 (Enhance help for Process > Math > Equation) created by bdezonia
The Process > Math > Equation plugin displays a very short help summary. …
15:31 Ticket #1178 (Decorate displayed images with enabled UI elements) closed by bdezonia
duplicate
15:28 Ticket #1178 (Decorate displayed images with enabled UI elements) created by bdezonia
There are a number of plugins that need to decorate a displayed image with …
14:45 Ticket #1177 (DrawingTool could be more flexible) created by bdezonia
The DrawingTool currently assigns all channels of a Dataset with data from …
14:28 Ticket #1176 (OPS speed baseline) created by bdezonia
Here are some statistics of a speed test I ran with OPS shortly before …
14:23 Ticket #1175 (UI ideas for Overlay Manager) created by bdezonia
THe IJ2 Overlay Manager is closely modeled after the IJ1 Roi Manager. It …
14:16 Ticket #1174 (Make Overlay Manager a singleton) created by bdezonia
It seems that we should only have one Overlay Manager per ImageJ context. …
14:03 Ticket #1173 (Rearrange legacy menu commands as needed) created by bdezonia
The legacy service has been enhanced with a runLegacyPlugin() command. Use …
11:55 Ticket #1172 (Reimplement some IJ1 plugins (beta 4)) created by bdezonia
Some IJ1 plugins cannot be fully supported by our legacy layer data …
11:54 Ticket #1171 (Reimplement some IJ1 plugins [plugins]) created by bdezonia
Some IJ1 plugins cannot be fully supported by our legacy layer data …
11:17 Ticket #503 (Improve Bio-Formats Hudson builds) closed by curtis
fixed: The remaining Maven build issues have been migrated to a [ ome:#8797
10:32 Ticket #1170 (Improve performance) created by bdezonia
Eliminate inefficiencies wherever possible. There are various other …
10:18 Ticket #1169 (Update Bio-Formats downstream projects) created by curtis
Once the licensing change (see …

05/11/12:

14:33 Ticket #1168 (Can no longer set background color using picker tool) created by bdezonia
You used to be able to set the BG values by right clicking on an image …
12:24 Ticket #1157 (Decide how to handle ImageDisplay.contains with Data object argument) closed by curtis
fixed: (In [5456]) Add Display.isDisplaying(Object) method This is a general …
11:48 Ticket #1167 (New Image fails to appear) created by gharris
Looks as thought the AbstractImageDisplayViewer.view(...), where the event …
11:46 Ticket #1087 (Add UIService.setStatus methods) closed by curtis
fixed: Whaddayaknow, I did this in a099a7ed3be92d69828b85e0e031410409eb1ea5 and …

05/10/12:

15:04 Ticket #1166 (Provide ROI rendering options) created by bdezonia
In the imagej-devel list Gabrriel Landini mentioned that the current …
14:54 Ticket #1165 (Polygon overlays draw/fill incorrectly) created by bdezonia
In the imagej-devel email list Justin Senseney noted issues when drawing …

05/09/12:

13:25 Ticket #1164 (ShadowMenu needs selected and enabled toggles) created by curtis
Currently, a ShadowMenu has an associated ModuleInfo that can be …
13:23 Ticket #1163 (DynamicPlugin instances should keep a local copy of their ...) created by curtis
Currently, if you try to run the same DynamicPlugin with two different …
13:08 Ticket #1162 (Improve menuing system [headless]) created by curtis
The menu system has some limitations and bugs that must be resolved. See …
13:06 Ticket #1161 (Use Application default JMenuBar on Mac) created by curtis
The com.apple.eawt.Application class has a nice …
12:37 Ticket #1160 (Menu bar creation is slow) created by bdezonia
As part of addressing these limitations we need to improve the speed of …
10:02 Ticket #671 (Stack To Images points out performance issues) closed by bdezonia
duplicate: Duplicate of #740. Closing.

05/08/12:

18:28 Ticket #1140 (Use fully qualified name for ij-launcher.jar) closed by dscho
fixed: Fixed in e0a674e333674777fa2c53e4fa1dbc8dbd231ca1.
18:17 Ticket #1121 (Teach the Updater about version numbers) closed by dscho
fixed: The Updater now knows about version numbers and can handle them. The …
18:16 Ticket #1118 (IJ2 can overwite Fiji's ImageJ.cfg) closed by dscho
fixed: The move of the ImageJ launcher to ImageJ2's repository is now finished. …
18:14 Ticket #1031 (Move the sources of the ImageJ launcher from Fiji's repository to ...) closed by dscho
fixed
15:48 Ticket #1159 (projector::map() called too often) created by bdezonia
Create a new 8 slice Hyperstack (1 c, 1 t). Run Stack To Images. If you …
12:55 Ticket #1158 (Import Image Sequence behavior is confusing) created by curtis
From David Knecht: There is an interface inconsistency between …

05/07/12:

15:41 Ticket #1157 (Decide how to handle ImageDisplay.contains with Data object argument) created by curtis
At the moment, if you have a Data object "data" and an ImageDisplay …

05/04/12:

16:41 Ticket #970 (Set Axis Position plugin does no bounds checking) closed by bdezonia
fixed: Fixed in 6528dde5358086f6e3f6060db5c4e5b624012fc4
15:51 Ticket #1156 (Active axis not getting initialized) created by bdezonia
DefaultImageDisplay::initActiveAxis() is no longer being called. This …
15:15 Ticket #1155 (Images can be slow to load) created by bdezonia
In another ticket Gabriel Landini reported that when loading sample images …
15:12 Ticket #1106 (Sample images do not always load) closed by bdezonia
worksforme: See #1155 for slow load issues See #1154 for problems loading two images …
14:48 Ticket #1154 (Simultaneous image openings are problematic) created by bdezonia
Open a big dataset (such as T1 head). While it is opening try opening …
13:31 Ticket #1153 (Support IJ1's full range of File Open behavior) created by bdezonia
IJ1's File Open command could open things other than images (like text …
13:29 Ticket #1135 (Edit LUT / Save LUT may not work) closed by bdezonia
fixed: I've verified that Edit LUT and Save LUT work. I can edit a lut and have …
11:09 Ticket #1105 (Shift click can maximize image window) closed by bdezonia
worksforme: Zoom drag threshold is 8 or more pixels. At that point it zooms the window …
10:48 Ticket #1146 (Math plugins don't handle merged color data correctly) closed by bdezonia
fixed: It appears that IJ1 applies a math op to each channel of a color image. …

05/03/12:

11:36 Ticket #1152 (Filled overlays should draw accurately) created by bdezonia
If you draw an ellipse overlay and then use the Fill command things look …
10:16 Ticket #1151 (Display range setting via legacy layer can be problematic) created by bdezonia
Open CT (now opened as 16-bit signed) Display is all black Debugging I …
10:10 Ticket #1150 (Flexibly handle translation hints in legacy layer) created by bdezonia
To minimize performance issues in the legacy layer isBinaryImp is passed …

05/02/12:

13:44 Ticket #795 (Respect signed 16-bit images) closed by bdezonia
fixed: This is now working with commits ee53d0df64e087ffe219c230d02537a50d51a90e …

04/30/12:

15:29 Ticket #1149 (Implement PointSets) closed by bdezonia
fixed
15:29 Ticket #1149 (Implement PointSets) created by bdezonia
We should allow API users to define a complex set of points and apply …
15:26 Ticket #1148 (Replace Process > Math > Macro) closed by bdezonia
fixed: With a number of commits culminating in …
15:24 Ticket #1148 (Replace Process > Math > Macro) created by bdezonia
IJ1's Process > Math > Macro needs to be updated to be compatible with …

04/29/12:

21:18 Ticket #1130 (ROI operations should apply to shape outline) closed by bdezonia
fixed: Shortly after beta 2 was released I updated the code. All operations are …
17:47 Ticket #1044 (Make IJ2 respect user specified memory limits) closed by dscho
fixed: Barry implemented the config file writing in …
17:13 Ticket #1147 (Miscellaneous Updater issues) created by dscho
* the updater *must* update the updater first, if updates for that are …
14:03 Ticket #1146 (Math plugins don't handle merged color data correctly) created by bdezonia
The math plugins modify values irregardless of channel. In IJ1 you can …

04/28/12:

14:38 Ticket #1145 (Add axis is not adding sliders) created by bdezonia
Make new IJ2 dataset (File IJ2's File New) Add axis (Z or C for instance, …

04/27/12:

21:27 Ticket #1144 (New Show LUT plugin missing "List" functionality) created by bdezonia
IJ2 has its own version of Show LUT. In IJ1 there is a button drawn in the …
21:22 Ticket #966 (Image > Color > Show LUT exceptions out) closed by bdezonia
fixed: With b840b6fec5f80a84170267f8d0696bad9cc02dcb I've implemented a pure IJ2 …
14:18 Ticket #1095 (ij-launcher project POM reports errors in Eclipse) closed by dscho
fixed: Curtis fixed this in bbcca3f6a27b675f63f5bf53193c62067fe0feab.
14:09 Ticket #1143 (Improve support for ROIs, segmentation and labeling [headless]) created by bdezonia
Some notes about ROIs SwingOverlayManager has a flatten command. In IJ1 …
12:44 Ticket #1142 (Sometimes images display with zero height) created by bdezonia
Use File Open (or Help::About) Open either of the /about images about1.tif …
12:00 Ticket #1141 (Copy To System enhancement) created by bdezonia
At one time Adam Fraser mentioned that it would be nice if the Copy …
11:11 Ticket #1134 (Copy To System broken) closed by bdezonia
fixed: With 3db7276d884c87dba281274097094fecc3f79951 Copy To System functionality …
08:48 Ticket #1140 (Use fully qualified name for ij-launcher.jar) created by dscho
At the moment, the launcher hardcodes the path jars/ij-launcher.jar, …

04/26/12:

16:08 Ticket #1139 (Images always load at 100% scale) closed by curtis
fixed: Fixed in af5969dce3e20cb3e5c96cdbcc0c6ea04f8cbfe1.
09:32 Ticket #441 (Window menu commands do not work) reopened by curtis
This functionality does not work.
09:14 Ticket #995 (Headless displays) closed by curtis
fixed: Lee developed this work on a branch which has now been merged as …
09:14 Ticket #616 (Handle the deletion of Displays) closed by curtis
fixed: Fixed in 9777f3ec4680b9d7c60dd8c703970c67cbf29d4c and …

04/25/12:

11:53 Ticket #911 (Refactor AbstractSwingImageDisplay scale reporting) closed by bdezonia
fixed: Fixed by Lee Kamentsky in recent headless display refactoring
10:49 Ticket #1139 (Images always load at 100% scale) created by bdezonia
Recently display refactoring was done shortly before the release of beta2. …
10:46 Ticket #1138 (Crop leaves old image in window) created by bdezonia
Recently display refactoring was done shortly before the release of beta2. …

04/24/12:

10:08 Ticket #1136 (Inverse FFT may not work correctly) closed by bdezonia
worksforme: After discussions with Curtis the plan is to close this. We cannot …
09:37 Ticket #547 (Make pure IJ2 Revert plugin) closed by curtis
fixed: Done in 879e1d002ba5b3227bec751b6c5e17e0e3ce1821, though it opens a new …
09:35 Ticket #778 (Nile Bend (1.9M) doesn't display) closed by curtis
invalid: There are still memory issues with large image planes. But that is a …
09:22 Ticket #1137 (Clear/Clear Outside misbehaving) created by bdezonia
open clown draw overlay run edit Clear pixels changed inside roi …

04/23/12:

16:28 Ticket #1136 (Inverse FFT may not work correctly) created by bdezonia
From afraser's original entry in IJ-Command-All google doc: Inverse FFT …
16:14 Ticket #771 (Reduce dimensionality doesn't respect selected plane) closed by bdezonia
fixed: Fixed some time ago when PlanePositionHarmonizer code added
16:03 Ticket #1135 (Edit LUT / Save LUT may not work) created by bdezonia
Taken from afraser's notes in IJ-Commands-All it seems that we could not …
15:26 Ticket #1134 (Copy To System broken) created by bdezonia
Open clows, Edit Colors - set to grayscale, Move channel slider to blue …
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