Timeline


and

02/26/12:

22:02 Ticket #1019 (Reimplement IJ1 features that the legacy layer cannot support) created by curtis
For a variety of reasons, IJ has some functions that cannot be supported …
21:54 Ticket #851 (Drag and Drop unsupported image file results in exception) closed by curtis
duplicate: Duplicate of #846.
21:43 Ticket #10 (Maintain strict separation of concerns (i.e., UI independence)) reopened by curtis
20:31 Ticket #11 (Improve plugins infrastructure) reopened by curtis
There are still some outstanding tickets blocking this feature from being …
19:55 Ticket #120 (Prototype App. on NetBeans Platform) reopened by curtis

02/24/12:

16:15 Ticket #1018 (Create ImageJ application based on NetBeans RCP) closed by curtis
wontfix
16:15 Ticket #1018 (Create ImageJ application based on NetBeans RCP) created by curtis
The NetBeans Rich Client Platform provides a powerful framework for …
15:29 Ticket #1017 (Extensible pixel type support) closed by curtis
fixed: These additional pixel types are working in ImageJ2 now, except for …
15:28 Ticket #1017 (Extensible pixel type support) created by curtis
ImageJ1 supports pixels in uint8, uint16 and float32, and to a lesser …
15:08 Ticket #1016 (Ensure all ImageJ1 functionality is available in ImageJ2) created by curtis
At minimum, ImageJ2 must be able to do everything ImageJ1 can do. Of …
15:03 Ticket #1015 (Thoroughly document ImageJ2 API) created by curtis
The ImageJ2 and ImgLib2 core classes must have full javadoc of all classes …
14:16 Ticket #1014 (Support for ImgLib-backed data in ImageJ1) closed by curtis
wontfix: As noted above, we abandoned this approach in favor of the legacy layer …
14:16 Ticket #1014 (Support for ImgLib-backed data in ImageJ1) created by curtis
One initial approach we took when developing ImageJ2 was a new …
14:05 Ticket #21 (Support for data source abstraction) reopened by curtis
The ImgLib container mechanism is great, but we need to actually *support* …
13:32 Ticket #1013 (ImgSaver for exporting image data) created by curtis
The workhorse of File > Open in ImageJ2 is the ImgOpener, part of ImgLib …
13:26 Ticket #1012 (Better unit testing of core ImageJ2 classes) created by curtis
There are many classes in core ImageJ2 that are currently not unit tested, …
13:15 Ticket #1011 (Robust ImageJ1 legacy layer) created by curtis
Our primary strategy for interoperability between ImageJ1 and ImageJ2 is a …
12:58 Ticket #1010 (Full backwards compatibility with ImageJ1) created by curtis
ImageJ2 must be backwards compatible with ImageJ1, able to run existing …
12:38 Ticket #1009 (Migrate SLIM Plugin to ImageJ2 [ndim-data]) created by curtis
The SLIM Plugin is currently written to work within ImageJ1, which is …
12:31 Ticket #1000 (Many uncommited new files exist under subversion) closed by curtis
fixed
12:04 Ticket #1008 (Migrate infrastructure from Fiji to ImageJ2) created by curtis
Fiji contains a variety of excellent general-purpose infrastructure, …
11:55 Ticket #1007 (Support for N-dimensional data) closed by curtis
fixed: ImgLib has been designed for N-dimensional data support, and our current …
11:54 Ticket #1007 (Support for N-dimensional data) created by curtis
ImageJ2 must support image data beyond 5 dimensions, into N dimensions.

02/23/12:

14:40 Ticket #40 (Support for non-rectilinear coordinate systems) reopened by curtis
In theory, ImgLib2 RealViews will provide the functionality we need. But …
14:34 Ticket #1006 (Interoperability between ImageJ and ITK) created by curtis
This is a blanket feature ticket representing desired interoperability …
14:33 Ticket #1005 (Interoperability between ImageJ and ICY) created by curtis
This is a blanket feature ticket representing desired interoperability …
14:33 Ticket #1004 (Interoperability between ImageJ and KNIME) created by curtis
This is a blanket feature ticket representing desired interoperability …
14:33 Ticket #1003 (Interoperability between ImageJ and OMERO) created by curtis
This is a blanket feature ticket representing desired interoperability …
14:33 Ticket #1002 (Interoperability between ImageJ and CellProfiler) created by curtis
This is a blanket feature ticket representing desired interoperability …
14:31 Ticket #1001 (Interoperability between ImageJ and other software) created by curtis
This is a blanket feature ticket representing our goal of interoperability …
11:24 Ticket #20 (Efficient support for very large image data) reopened by curtis
This ticket is now a story describing the end goal of supporting large …
10:25 Ticket #1000 (Many uncommited new files exist under subversion) created by bdezonia
Check out imagej via subversion. Load it into Eclipse. After building …

02/22/12:

16:02 Ticket #999 (Improve ImgLib documentation) created by curtis
As part of our code documentation, we need to flesh out the documentation …
15:58 Ticket #998 (Add README.txt to imagej2 and imglib repositories) created by curtis
Github likes a README.txt at the toplevel that describes the purpose of …
15:02 Ticket #997 (Convert JHotDrawOverlayAdapter annotation to a Plugin type) created by curtis
As part of the effort to standardize discovered elements to use ImageJ's …
14:14 Ticket #996 (Standardize license blurbs in ImageJ2, ImgLib and SCIFIO/Bio-Formats) created by curtis
A few changes are needed to the license blurbs of various projects in the …
14:07 Ticket #995 (Headless displays) created by curtis
Displays need to become fully UI-agnostic. It should be possible to say …
13:59 Ticket #994 (Combine ij-core and ij-ext) created by curtis
Keeping the service mechanism in ij-core separate from the extensibility …
13:43 Ticket #993 (Encapsulate discovery mechanism) created by curtis
In ImageJ2 we have taken pains to encapsulate certain dependencies, in …
11:37 Ticket #992 (Allow classes other than Displays to maintain menu bar) created by bdezonia
On the mac the menu bar is reestablished every time a display is created …

02/21/12:

16:18 Ticket #991 (Mavenize Fiji) created by dscho
If we ever want to have a unified development model, Fiji should be able …
16:15 Ticket #990 (Provide meaningful ImgLib2 examples and code templates) created by dscho
Work has been started on this in imglib's for-steffi branch which serves …
16:13 Ticket #989 (Make a useful Migration Guide for ImgLib1 -> ImgLib2) created by dscho
This was started already in imglib's for-steffi branch. There, we tried to …
15:37 Ticket #988 (More intelligent syncing between ShadowMenu and UI-specific menus) created by curtis
Currently, when a ShadowMenu change and fires a subclass of MenuEvent, the …
14:27 Ticket #987 (More context sensitivity is required for modules in menus) created by curtis
It needs to be possible for a module to be available (i.e., enabled or …
09:32 Ticket #986 (Persist toolbar and status bar configuration) created by curtis
The main Swing application's JToolBar can be detached into a floating …

02/20/12:

09:55 Ticket #632 (Add access to menus and make them more dynamic) closed by curtis
fixed: Remaining menu syncing problem filed as separate ticket #985. Closing this …
09:55 Ticket #985 (Multiple menu bars are not synced properly) created by curtis
Multiple menu bars are not kept synced. That is, the main ImageJ …

02/17/12:

11:54 Ticket #984 (Interactivity of ROI drawing is somewhat lacking) created by bdezonia
When you draw a ROI (rect, oval, line, etc.) the outline does not start …
10:04 Ticket #983 (IJ1 ships with more plugins) created by bdezonia
The IJ1 Plugins menu has many more commands than IJ2. Add missing plugins …
09:51 Ticket #982 (Analyze > Tools > Scale Bar command issues) created by bdezonia
The Analyze > Tools > Scale Bar command does not entirely work in IJ2. In …
09:49 Ticket #981 (Rewrite interactive plugins) created by bdezonia
There are a number of interactive plugins that might need to be rewritten …
09:39 Ticket #980 (Analyze > Tools > Calibration Bar command issues) created by bdezonia
The Analyze > Tools > Calibration Bar command does not entirely work in …

02/16/12:

12:23 Ticket #979 (Problems with data 1 pixel wide) created by bdezonia
Open Blobs. Use the delete axis plugin to delete the X axis (this is …
12:18 Ticket #918 (Delete Axis not happy with 2d images) closed by bdezonia
fixed: Fixed in e643cb07bab8a16c94bd5ca1e84dcffdfed3417d

02/15/12:

15:38 Ticket #866 (Sometimes plugins are slow to populate their data) closed by bdezonia
fixed: In a3ba7159826fbb9a60585340613d3cceb0782ef2 the performance of thread …
14:57 Ticket #978 (Update display mechanism for complex data) created by bdezonia
When we support the display of complex data we'll likely need the ability …
14:25 Ticket #977 (Process>Math>NaN Background is unfinished) created by bdezonia
The Process>Math>NaN Background plugin temporarily asks for threshold …

02/14/12:

16:46 Ticket #976 (Make OPS more generic) closed by bdezonia
fixed: Fixed with commits: Imglib: eeba23 ImageJ2: …
16:44 Ticket #976 (Make OPS more generic) created by bdezonia
OPS has defined a lot of operations like this: …

02/13/12:

21:51 Ticket #975 (Red X appears initially in new image windows) created by curtis
When a new image window pops up (e.g., from File > Open Samples > Blobs), …
16:40 Ticket #930 (Verify multichannel ImagePluses of type COLOR_RGB are supported) closed by bdezonia
fixed: Logic looks good.
15:57 Ticket #963 (Image Rotate and Translate plugins less functional) closed by bdezonia
duplicate
15:46 Ticket #874 (Make overlay drawing tools respect OptionsOverlay settings) closed by bdezonia
fixed: This was fixed some time ago
15:39 Ticket #718 (ImageJ 1.45m added Image>Overlay>Overlay Options command) closed by bdezonia
fixed: This ticket handled some time ago.
15:22 Ticket #931 (Compile and run plugin fails) closed by bdezonia
fixed: In 70fbbb7e1f49187c09e6721a35fe6d6618db1285 made changes that close …
15:19 Ticket #974 (Display::close() does not actually close window) created by bdezonia
The following plugin is ineffective. The event tracking somehow does not …
10:09 Ticket #973 (Fully support IJ1's Roi manager functionality) created by bdezonia
IJ2 has a Roi Manager that does nothing. The IJ1 version of the Roi …

02/10/12:

12:47 Ticket #972 (Implement configure() method of PickerTool) created by bdezonia
In IJ1 double clicking the color picker tool pulls up a window where you …
12:43 Ticket #971 (Need programatic access for keyboard modifiers) created by bdezonia
Some tools (PickerTool, AbstractLineTool) need to know when the ALT key is …

02/09/12:

15:39 Ticket #970 (Set Axis Position plugin does no bounds checking) created by bdezonia
The Set Axis Position plugin does not check that the upper limit of the …
15:38 Ticket #969 (Composite images interact poorly with overlay drawing) created by bdezonia
Open Confocal Series sample image Draw a Line overlay on the image Move …
15:34 Ticket #968 (Some commands can mess with LUT) created by bdezonia
Open Confocal Series sample image Run File Print - choose PDF option and …
15:28 Ticket #967 (The Edit > Draw command can draw in the wrong color) created by bdezonia
Run Options > Colors dialog. - set fg color value to black (0,0,0) and fg …
15:00 Ticket #966 (Image > Color > Show LUT exceptions out) created by bdezonia
Open Boats and run Image > Color > Show LUT. The following exception is …
14:39 Ticket #965 (IJ2 does not track color just like IJ1) created by bdezonia
In IJ1 we track fg/bg colors. In IJ2 the gray values and the color values …
14:07 Ticket #964 (Make Binary broken) created by bdezonia
Open CLown Run "Threshold..." plugin and select some region within the …
13:28 Ticket #963 (Image Rotate and Translate plugins less functional) created by bdezonia
In IJ1 the Image>Rotate... and Image>Translate... plugins can display grid …
13:28 Ticket #962 (Image Rotate and Translate plugins less functional) created by bdezonia
In IJ1 the Image>Rotate... and Image>Translate... plugins can display grid …
13:06 Ticket #961 (Add/delete axis/data plugins mislocated?) created by bdezonia
In IJ1 we had add/delete slice in the stacks menu. In IJ2 you need to …
12:46 Ticket #960 (One of the Line Width ... plugins does nothing) created by bdezonia
In IJ1 there are two Line Width ... plugins (use Find Commands to see). …
12:28 Ticket #959 (Confocal-series.tif does not print like IJ1) created by bdezonia
Using confocal-series.tif sample image In IJ1 print to PDF prints the …

02/07/12:

15:52 Ticket #880 (IJ2 Zoom behavior a little different from IJ1) closed by bdezonia
fixed: Fixed in 8fedffcf4bfa0796aadec45140c7aad4ab47abaa.
13:58 Ticket #935 (Add Data plugin does not populate values correctly) closed by bdezonia
fixed: Using aaa76dce2ec31645b99362c0dc7a87a5d918b9e8 I can not duplicate the …

02/06/12:

16:14 Ticket #958 (Implement Point Roi Tool) closed by bdezonia
fixed
16:14 Ticket #958 (Implement Point Roi Tool) created by bdezonia
16:13 Ticket #957 (Implement Pencil Tool) closed by bdezonia
fixed
16:13 Ticket #957 (Implement Pencil Tool) created by bdezonia
16:13 Ticket #956 (Implement Brush Tool) closed by bdezonia
fixed
16:13 Ticket #956 (Implement Brush Tool) created by bdezonia
16:12 Ticket #955 (Implement Flood Fill Tool) closed by bdezonia
fixed
16:12 Ticket #955 (Implement Flood Fill Tool) created by bdezonia
16:11 Ticket #954 (Improve Picker Tool) closed by bdezonia
fixed
16:11 Ticket #954 (Improve Picker Tool) created by bdezonia
15:45 Ticket #899 (SLIM Plugin - fix display plugin concept) closed by aivar
fixed: Moved to LOCI Trac:  http://dev.loci.wisc.edu/trac/software/ticket/671
15:35 Ticket #902 (SLIMPlugin - Clean up UI) closed by aivar
fixed: Moved to the LOCI Trac: …
15:32 Ticket #900 (SLIMCurve/SLIMPlugin: Add additional TRI2 fitting capabilities) closed by aivar
fixed
15:24 Ticket #281 (Create multi-platform version of SLIMPlugin.) closed by aivar
fixed
15:23 Ticket #920 (Legacy layer issues with Linux) closed by bdezonia
fixed: Johannes pointed out that this has to do with an unconfigured Java …
15:20 Ticket #901 (Package SLIM Plugin release) closed by aivar
fixed: Moved to the LOCI Trac:  http://dev.loci.wisc.edu/trac/software/ticket/668
15:05 Ticket #887 (SLIMCurve: Fix GCI_marquardt_estimate_errors) closed by aivar
fixed: Moved to LOCI trac  http://dev.loci.wisc.edu/trac/software/ticket/666
14:45 Ticket #953 (The ShowPrefs plugin is broken) created by bdezonia
The ShowPrefs plugin was created to be displayed when the user selects the …
10:53 Ticket #889 (Provide Histogram tool for SLIMPlugin.) closed by aivar
fixed: Moved to the LOCI Trac  http://dev.loci.wisc.edu/trac/software/ticket/665
10:50 Ticket #888 (SLIMPlugin: Fitting engine rework) closed by aivar
fixed
10:18 Ticket #952 (Implement Spray Can Tool) created by bdezonia
There is a spray can tool icon in the toolbar. IJ1 does not have a spray …
09:56 Ticket #951 (Implement Stack (menu) Tool) created by bdezonia
09:55 Ticket #950 (Implement Developer (menu) Tool) created by bdezonia
09:54 Ticket #949 (Implement Abort (macro or plugin) Tool) created by bdezonia
09:53 Ticket #948 (Implement Text Tool) created by bdezonia
09:52 Ticket #947 (Implement Wand (tracing) tool) created by bdezonia
09:50 Ticket #946 (Implement Multi-point Tool) created by bdezonia
09:50 Ticket #945 (Implement Arrow Tool) created by bdezonia
09:49 Ticket #944 (Implement Freehand Line Tool) created by bdezonia
09:48 Ticket #943 (Implement Segmented Line Tool) created by bdezonia
09:47 Ticket #942 (Implement Freehand Selection Tool) created by bdezonia
09:46 Ticket #941 (Implement Selection Brush Tool) created by bdezonia
09:45 Ticket #940 (Implement Ellipse Tool) created by bdezonia
Note that we have done the Oval Tool. The Ellipse Tool allows one to …
09:43 Ticket #939 (Implement Rounded Rect Tool) created by bdezonia

02/03/12:

18:34 Ticket #938 (Implement Point tool) closed by bdezonia
fixed
18:34 Ticket #938 (Implement Point tool) created by bdezonia
Implement the point tool. (Note, make all overlay tools draw the same no …
18:32 Ticket #937 (Implement Angle tool) created by bdezonia
The Angle tool is unimplemented. Make an AngleAdapter (like LineAdapter, …
18:28 Ticket #936 (Window menu does not pull image to front) created by bdezonia
Open Blobs. Open another application over it (like terminal). Switch back …
18:26 Ticket #935 (Add Data plugin does not populate values correctly) created by bdezonia
Open T1 Head. Run Add Data plugin. Notice axis defaults to X (ok) and …
18:20 Ticket #934 (Drawing overlay changes tool focus) created by bdezonia
If you draw an overlay the active tool goes from the overlay tool you had …
18:14 Ticket #933 (Adding overlays can zoom inappropriately) created by bdezonia
Open an image and zoom in a ways. Draw an overlay (like a line or a …
18:10 Ticket #932 (Polygon tool needs to be completed) created by bdezonia
The polygon tool (PolygonAdapter) exists but it is nonfunctional. You …

02/02/12:

13:18 Ticket #931 (Compile and run plugin fails) created by bdezonia
The plugin below was meant to be run after loading Boats. It works in IJ1. …
12:06 Ticket #930 (Verify multichannel ImagePluses of type COLOR_RGB are supported) created by bdezonia
Before the major refactor of the legacy layer I think there code was in …
09:29 Ticket #929 (Support IJ1's subpixel resolution code) created by bdezonia
Recently IJ1 added subpixel resolution for ROIs. Support this in IJ2. …

02/01/12:

14:49 Ticket #928 (Merge channels not working) created by bdezonia
The Colors > Merge Channels command does not work correctly. Statup IJ2. …
13:58 Ticket #927 (Out of memory issue with Add Data plugin) created by bdezonia
It is pretty easy to run out of memory using the Add Data plugin. …
13:46 Ticket #926 (Drawing tools limitation with composite images) created by bdezonia
When drawing on a composite image (like Organ of Corti) it is not possible …
09:24 Ticket #925 (Drawing tools too slow on big images) created by bdezonia
Open Embryos (a color image) and use the paint brush tool. The drawing …

01/31/12:

10:08 Ticket #924 (Duplicate plugin not completely successful) created by bdezonia
If you try to Duplicate the Blobs image you'll see that the colors are …
09:52 Ticket #923 (PixelProbe can exception out) closed by bdezonia
fixed: Fixed in 2f9888ee12173b3e90c8ee313e7ba314dd9ff33f.

01/30/12:

16:39 Ticket #923 (PixelProbe can exception out) created by bdezonia
There is an issue with modifying a dataset in place that can cause …
16:32 Ticket #916 (Exception when adding an axis) closed by bdezonia
fixed: Fixed with 8a637ccb620dc9f89a23b8d3e43d3b5d4f6b5bce. Other exceptions now …
15:48 Ticket #922 (Overlay tools: right click can create tiny anomaly) created by bdezonia
If you activate either the rectangle tool or the oval tool and right click …
14:05 Ticket #921 (Application Framework Generalization) created by gharris
Generalize Application Framework In relation to having created a …
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