Timeline


and

12/08/11:

13:00 Ticket #909 (IJ1 & IJ2 Stack To Images results differ) created by bdezonia
In both IJ1 & IJ2: create new 3 channel Color Hyperstack and then run …
12:55 Ticket #906 (Loaded image changes shade after a few seconds) closed by bdezonia
fixed: Problem was legacy layer was doing some drawing and doing it before …

12/07/11:

12:53 Ticket #892 (IJ1 Color picker does not affect IJ2) closed by bdezonia
fixed: in c3764a9434e0cfc57e4cdc19d4dd49535c84dbf9 made color picker support …

12/06/11:

17:34 Ticket #908 (Enable ability to flush legacy mapped images) created by bdezonia
IJ2 makes shadow IJ1 images when legacy plugins are run. These images …

12/05/11:

15:46 Ticket #907 (Some legacy plugins can't harmonize correctly) created by bdezonia
During experiments with supporting fg/bg value (as opposed to IJ1's fg/bg …
15:40 Ticket #906 (Loaded image changes shade after a few seconds) created by bdezonia
Load boats. Image is drawn. Wait a few seconds. Image redraws but darker. …
15:34 Ticket #905 (Overlays can disappear) created by bdezonia
Open boats. Draw two overlays quickly right after loading. Wait a while …
09:55 Ticket #904 (Implement Threshold Plugin) created by gharris
Implement Image::Adjust::Threshold Plugin
09:41 Ticket #903 (Implement Window/Level Adjustment Plugin) created by gharris
Implement the equivalent functionality of the IJ1 …

12/02/11:

20:48 Ticket #902 (SLIMPlugin - Clean up UI) created by aivar
The main UI panel needs some work. I did try to simplify by presenting …
20:24 Ticket #901 (Package SLIM Plugin release) created by aivar
Build SLIMCurve on all supported native platforms and push to Maven. …
20:22 Ticket #900 (SLIMCurve/SLIMPlugin: Add additional TRI2 fitting capabilities) created by aivar
SLIMCurve currently includes code for global fitting, phasor fitting, and …
20:17 Ticket #899 (SLIM Plugin - fix display plugin concept) created by aivar
Find a better way to initiate SLIM Plugin. The IJ2 display plugin concept …
20:06 Ticket #369 (Polish up SLIM Curve for TRI2) closed by aivar
fixed: This is done and SLIMCurve is now officially part of TRI2. There is one …
09:43 Ticket #898 (Update restructure plugins to use global initializers) closed by bdezonia
fixed: Fixed in afad23c5744d616101dac84bbb05a568a424286d

12/01/11:

12:33 Ticket #893 (Memory leak exists) closed by bdezonia
fixed: Fouind a fix/workaround in 35ac3e787da2256df9245f4470e032df12343882. Will …
12:06 Ticket #898 (Update restructure plugins to use global initializers) created by bdezonia
The restructure plugins were written before the global initializer code …
09:05 Ticket #897 (Modifiers on MenuItem and Tool Events) created by gharris
I’ve come across some IJ1 UI Peculiarities that I’m wondering if we do or …

11/30/11:

12:09 Ticket #896 (Edit > Fill does not always fill the right and bottom boundary pixels) closed by bdezonia
fixed: Fixed in b39f87ed4d95e81a78a1297c3af94748293773af
12:08 Ticket #896 (Edit > Fill does not always fill the right and bottom boundary pixels) created by bdezonia
For noncolor images the Edit > Fill command skips the right most column …
12:00 Ticket #895 (Make SwingStatusBar respect user preferences) closed by bdezonia
fixed: Fixed in 6965b4e498ef1a637ce5666fd0f97968691a33bb
11:59 Ticket #895 (Make SwingStatusBar respect user preferences) created by bdezonia
The SwingSTatusBar always runs System.gc() when clicked. Make it respect …
11:58 Ticket #894 (Salt and Pepper plugin has differences from IJ1) closed by bdezonia
fixed: Made changes in 428a4347ae1a405314fb879b0700f373b599e352. Now applies …
11:55 Ticket #894 (Salt and Pepper plugin has differences from IJ1) created by bdezonia
The Salt and Pepper command adds 0's and 255's to all input images. In IJ1 …
11:46 Ticket #746 (Delete Axis can fail) closed by bdezonia
fixed: Can no longer duplicate. Closing.
11:45 Ticket #893 (Memory leak exists) created by bdezonia
From within Eclipse (runs with min memory): Open T1 Head Open Organ Corti …

11/28/11:

15:40 Ticket #705 (Fix LookupTable (IJ1)) closed by gharris
fixed: Tested this, and it appears to be working correctly (no thanks to me).
15:11 Ticket #892 (IJ1 Color picker does not affect IJ2) created by bdezonia
The Image > Color > Color Picker command runs but has no effect on IJ2. We …
15:02 Ticket #506 (Fix fill plugin when color selection code in place) closed by bdezonia
fixed: In 97e0e577b9141e53d759ccf51f4e2bcee3e8d9c0 it uses the current FG color …
14:38 Ticket #891 (IJ1 context menu is unavailable in IJ2) created by bdezonia
In IJ1 if you right click on an open image window you get a menu of …
10:03 Ticket #890 (Pixel Probe does not report RGB values for color images) closed by bdezonia
fixed: Fixed in 415f47e67f4af77dad549878ad2d4731920f69ab
09:44 Ticket #890 (Pixel Probe does not report RGB values for color images) created by bdezonia
In IJ1 the pixel probe shows single pixel values for gray images and rgb …

11/23/11:

20:10 Ticket #889 (Provide Histogram tool for SLIMPlugin.) created by aivar
An important tool for FLIM image analysis is having a Histogram tool that …
20:01 Ticket #888 (SLIMPlugin: Fitting engine rework) created by aivar
Rearchitecture of the fitting engine: i) Allow multithreading ii) Provide …
19:55 Ticket #887 (SLIMCurve: Fix GCI_marquardt_estimate_errors) created by aivar
Re-enable the GCI_marquardt_estimate_errors function in SLIMCurve, which …
15:58 Ticket #625 (Hotkey problems in IJ2) reopened by curtis
On second thought, I am reopening this ticket but pushing it to a later …
15:30 Ticket #625 (Hotkey problems in IJ2) closed by curtis
fixed: (In [4482]) Change displayed shortcuts for axis pos plugins Closes #625. …
12:16 Ticket #882 (Delete Axis enhancement) closed by bdezonia
fixed: fixed in be9f36149e29e3782ab1d960e96ed91a57517633
10:52 Ticket #886 (Update UI widgets to support dynamic changes to input ranges) created by bdezonia
There are cases where DynamicPlugins would like to update their associated …
10:42 Ticket #885 (Allow plugin parameters to be hidden) created by bdezonia
DynamicPlugin implementers might want the ability to show and hide …
09:40 Ticket #577 (Keyboard shortcuts for dimensional sliders) closed by gharris
fixed
09:39 Ticket #793 (Make scroll wheel behavior consistent with IJ1) closed by gharris
fixed

11/22/11:

15:57 Ticket #881 (Dynamic plugins do not respect compiled initialization) closed by curtis
fixed: Fixed in 3cd6179cd92be6a7f39a2739f4301b3c488eb610.
14:12 Ticket #883 (Use overlay defaults) closed by bdezonia
fixed: Fixed in 665b4df8175a7e261e6e2b501603aa41ce13f15e
10:41 Ticket #815 (Exception when adding axes: possible race condition) closed by bdezonia
fixed: Found issue and fixed in 9de2360eff61f119722b544de551596bd195da31
10:41 Ticket #884 (Decouple data events from display classes) created by bdezonia
Some of the display classes (AbstractImageDisplay, SwingImageDisplay) …
09:20 Ticket #883 (Use overlay defaults) created by bdezonia
There are now default Overlay Options settings in the Image > Overlay …
09:16 Ticket #882 (Delete Axis enhancement) created by bdezonia
For DeleteAxis we should add a couple enhancements: 1) add an initializer …
09:09 Ticket #881 (Dynamic plugins do not respect compiled initialization) created by bdezonia
If you make a DynamicPlugin and set the various @Parameter fields with …

11/21/11:

16:44 Ticket #880 (IJ2 Zoom behavior a little different from IJ1) created by bdezonia
Note that in IJ1 if you zoom in and out the image window resizes for a …
16:42 Ticket #859 (Zoom > Set : IJ2 differs from IJ1) closed by bdezonia
fixed: With 45b27611ed51f927c62e2507b80dbf6dd378c1cc zoom center defaults …
14:15 Ticket #828 (Streamline the updating of displays) closed by curtis
fixed: (In [4446]) Refactor away ImageDisplay.redoWindowLayout method The method …
14:08 Ticket #879 (Allow fractional scale reporting to be supported) closed by bdezonia
fixed: Implemented in 868246c84a79845e2a0259953dadca86dba1da0b
11:37 Ticket #879 (Allow fractional scale reporting to be supported) created by bdezonia
In d44f6d06673067b0aebf578b7b1c98e4afe77d42 support code was added to …
11:26 Ticket #825 (Tall images may never display) closed by bdezonia
fixed: Some time ago I added code to fix initial scaling. It uses only predefined …
11:19 Ticket #736 (Update dynamic plugins that deal with axis ranges) closed by bdezonia
fixed: All updated via commits 4aff730f13106b241586be76761f5a7efc459b73, …
10:58 Ticket #878 (Support "subtracting" ROIs) created by dscho
In ImageJ 1.x, you can hold down the Alt key when selecting a region which …
10:56 Ticket #877 (Consider whether we can have a Help>Refresh Menus) created by dscho
Original ImageJ 1.x has a feature where you can drop new or updated .jar …

11/18/11:

11:18 Ticket #876 (Menu is disappearing) closed by curtis
fixed: (In [4431]) Scan for @EventHandler annotations recursively Fixes #876. …
10:32 Ticket #876 (Menu is disappearing) created by bdezonia
After opening an image the menu is no longer present. Clicking on the app …

11/17/11:

16:10 Ticket #875 (Exception thrown when creating overlays) created by bdezonia
Open any image. Draw an overlay. Exception thrown: Exception in thread …
15:48 Ticket #872 (Add better overlay defaults behavior) closed by bdezonia
fixed: Relocated in menu tree to Image :: Overlay :: Overlay Options Decided to …
11:25 Ticket #874 (Make overlay drawing tools respect OptionsOverlay settings) created by bdezonia
The various adapters in ij-ui-swing-tools (such as RectangleAdpater, …
11:17 Ticket #873 (Improve overlay options color support) closed by bdezonia
fixed: ColorRGB's are supported with GUI widgets already. New UI in place with …
09:15 Ticket #873 (Improve overlay options color support) created by bdezonia
The IJ1 Overlay Options dialog allows user to specify line color and fill …

11/15/11:

16:50 Ticket #872 (Add better overlay defaults behavior) created by bdezonia
IJ1 make the Overlay Options dialog set defaults and apply changes to the …
12:50 Ticket #871 (Image > Zoom > Set... plugin does not always pan over center) created by bdezonia
Open boats. Use the Image > Zoom > Set... plugin. Choose center 400,400 @ …

11/14/11:

10:58 Ticket #723 (Clear Preferences Plugin) closed by bdezonia
fixed: In b7bc8516a7e860272675d9b621be3d9967845a8e added ability for ShowPrefs …

11/10/11:

13:04 Ticket #870 (Improve the thread whitelist in LegacyPlugin) created by bdezonia
Some threads in IJ1 do not terminate until windows close (such as …
12:53 Ticket #869 (Make IJ2 options/settings applicable to IJ1) created by bdezonia
We have rewritten all of the IJ1 options dialogs as IJ2 options plugins. …

11/09/11:

14:05 Ticket #561 (Test: can GrayscaleTranslator ever make a COLOR or GRAYSCALE ...) closed by bdezonia
fixed: Fixed in 8a85b4f4240ad6d37a0a53ac50804880dc98718a
11:27 Ticket #522 (Determine how to approach HSB support) closed by bdezonia
fixed: After further discussions with Wayne it appears no HSB changes were made …
10:49 Ticket #868 (Verify waitForThreads() code in LegacyPlugin is safe) created by bdezonia
A second legacy plugin can be run while a first one is already running. …
10:43 Ticket #867 (Image>Type>RGB Stack never completes) closed by bdezonia
fixed: RGB Stack issue fixed in c57e1cf8de7137ded8bcde2f95dce351a91d25a1. Opening …
09:34 Ticket #867 (Image>Type>RGB Stack never completes) created by bdezonia
Open Clown. Run IJ1 plugin Image > Type > RGB Stack. Nothing happens. Add …
08:49 Ticket #762 (IJ1 Cut/Copy/Paste gets tangled with IJ2 functions on Overlays) closed by bdezonia
fixed: After clarifying with Adam this seems fixed.

11/08/11:

15:34 Ticket #866 (Sometimes plugins are slow to populate their data) created by bdezonia
LegacyPlugin has code in place to wait for plugin threads to terminate …
15:28 Ticket #764 (New image filled with wrong value) closed by bdezonia
fixed: Tested with 6263f51f04d11eaba2fe1777ddfe7fabb5f03e10 and the data is …
14:53 Ticket #840 (Histogram command is not like IJ1) closed by bdezonia
fixed: In 6263f51f04d11eaba2fe1777ddfe7fabb5f03e10 fixed a bug in Harmonizer. …
12:17 Ticket #865 (Implement Histogram dialog functionality) created by bdezonia
In IJ1 the Histogram plugin opens an ImageWindow showing the histogram as …
11:31 Ticket #856 (Exception when running an IJ2 plugin that has parameters with no image) closed by curtis
fixed
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