Timeline


and

10/21/11:

18:57 Ticket #813 (Provide a way for Fiji's Build System to handle our pom.xml files without ...) closed by dscho
fixed: The VerifyErrors are indeed fixed now, and I can use Fiji Build to compile …
18:51 Ticket #812 (Use ImageJA as Maven project to build ImageJ) closed by dscho
fixed: The Jedhunks job is installed: …
09:41 Ticket #842 (Verify overlay translation code happening everywhere it needs to) created by bdezonia
The OverlayHarmonizer (was OverlayTranslator) is only referenced in the …

10/20/11:

22:33 Ticket #841 (Compile a collection of sample images for About dialog) created by curtis
The ImageJ2 About dialog needs a background image, similar to the IJ1 …
17:03 Ticket #781 (Window/Level broken) closed by curtis
wontfix: This is a GUI-driven plugin, not slated for support from IJ2. The issue is …
17:03 Ticket #780 (Color Balance broken) closed by curtis
wontfix: This is a GUI-driven plugin, not slated for support from IJ2. The issue is …
16:40 Ticket #835 (File Close sometimes opens images) closed by bdezonia
fixed: (In [4179]) fix bug 835: legacy image map no longer listens to …
16:29 Ticket #840 (Histogram command is not like IJ1) created by bdezonia
Run IJ1 & IJ2 side by side. Open leaf in both of them. Run Analyze > …
16:28 Ticket #824 (Improve error handling by LegacyPlugin when given an incompatible Dataset) closed by curtis
fixed: I tweaked a bit in 7ce554b52a3425ac7608e115e0afdb77e53f47c4, but it looks …
16:26 Ticket #839 (Some plugins names do not match their labels) created by curtis
When looking for a plugin's source code, users will first look for a Java …
16:23 Ticket #810 (Exception thrown by input dialog of ImageMath) closed by curtis
fixed: I filed a new ticket, #838, to track the general problem with persistence. …
16:22 Ticket #838 (Better persistence behavior for unsupported object types) created by curtis
The persistence mechanism serializes object values using toString() and …
14:19 Ticket #837 (BeanShell-based IJ2 macro language) created by curtis
By bundling ImageJ1 with the ImageJ2 distribution, we can support the IJ1 …
14:07 Ticket #836 (Change File New ramped image behavior) created by bdezonia
The File New command does not create ramped data the same as IJ1. Make it …
14:04 Ticket #835 (File Close sometimes opens images) created by bdezonia
Open embryos. Open clown. Now File Close clown. Clown closes. A second …
13:44 Ticket #624 (Close IJ2 Display when an IJ1 plugin closes IJ1 ImagePlus/ImageWIndow) closed by bdezonia
fixed: File Close and File Close All issues fixed with changes …

10/19/11:

16:04 Ticket #768 (Built in LUTs don't work) closed by bdezonia
fixed: Fixed with 76e40fc0e2c1465400c71f289c9cb731b2964928
16:04 Ticket #765 (Import LUT does nothing) closed by bdezonia
fixed: Fixed with 76e40fc0e2c1465400c71f289c9cb731b2964928
16:04 Ticket #774 (convert to 8-bit color broken) closed by bdezonia
fixed: Fixed with 76e40fc0e2c1465400c71f289c9cb731b2964928
15:13 Ticket #775 (Convert to 8-bit broken) closed by bdezonia
fixed: All issues cleared up with one line fix in …
11:53 Ticket #834 (Spreadsheet bindings for results table) created by curtis
We can use  JACOB to provide an IJ2 plugin …

10/18/11:

16:49 Ticket #576 (Visual feedback for composite channel slider changes) closed by curtis
fixed: (In [4168]) Add visual feedback for channel slider. This is similar to …
16:20 Ticket #833 (Write tests for legacy layer) created by bdezonia
We need to verify that the legacy layer is translating data correctly. We …
16:18 Ticket #551 (Improve legacy layer) closed by bdezonia
fixed: Refactored the legacy layer substantially. Two main commits were …
15:42 Ticket #554 (File::New::Hyperstack results in duplicate images being created/displayed) closed by curtis
fixed: I do not know if this fix is "legitimate" or not, in that the check …
15:27 Ticket #832 (Integrate the Fiji launcher as new ImageJ2 launcher) created by dscho
The Fiji launcher is needed for the updating mechanism to work properly, …
15:26 Ticket #550 (Convert RGB to 8-bit color displays as grey) closed by curtis
duplicate: Looks like this ticket was filed again as #774. Closing this one as a …
15:16 Ticket #141 (Add bf-cpp binary builds to Hudson and Bio-Formats web site) closed by curtis
wontfix: Unfortunately, we decided this is too complicated, time consuming and …
11:56 Ticket #831 (Scaling an new IJ2 image results in a black image) closed by bdezonia
fixed: Fixed as part of legacy layer refactor code in …
10:36 Ticket #831 (Scaling an new IJ2 image results in a black image) created by bdezonia
Create a new IJ2 image, 8 bit ramp, using IJ2's version of File New. Run …

10/17/11:

14:14 Ticket #830 (Need to track foreground and background values) created by bdezonia
There are some plugins (such as Fill) that need to know what the current …
14:10 Ticket #829 (Make IJ2 versions of the IJ1 tools) created by bdezonia
We have implemented a couple tools so far (probe, zoom, etc.). There are …
12:49 Ticket #828 (Streamline the updating of displays) created by bdezonia
Thoce existing display update architecture is complex. There is reliance …
11:57 Ticket #754 (Enhance Imglib OPS to support out of bounds access to Img data) closed by bdezonia
fixed: Done with commit e2a22551feac07c57945d6b9479542eda0d7d49a
11:03 Ticket #827 (Fix Event Handling in JHotDrawImageCanvas) created by gharris
Events at the JHotDraw level do not propagate to the EventBus.
11:01 Ticket #808 (Add Event Handling Priority/Ordering) closed by gharris
fixed: All the event handling methods in ITool/AbstractTool return a boolean …

10/14/11:

17:33 Ticket #580 (Support ctrl+click to zoom out) closed by curtis
fixed: Fixed in 7ce554b52a3425ac7608e115e0afdb77e53f47c4. This was made possible …
13:16 Ticket #826 (Crop does not always resize window) created by bdezonia
Crop has recently been rewritten. When you do a crop sometimes the canvas …

10/13/11:

13:48 Ticket #717 (ProbeTool exception with Overlays outside of image area.) closed by bdezonia
fixed: Exception no longer happening. Crop issues live in ticket #818.
12:38 Ticket #825 (Tall images may never display) created by bdezonia
In IJ2 a 10000x100 image pops up on the screen very quickly. A 100x10000 …
10:50 Ticket #823 (Can't create large new image) closed by bdezonia
duplicate: This bug is just another way to get in the state described by #802.
09:46 Ticket #563 (Improve how legacy layer handles data that cannot be represented in IJ1) closed by bdezonia
fixed: Opening remaining part of ticket as new one: #824
09:44 Ticket #824 (Improve error handling by LegacyPlugin when given an incompatible Dataset) created by bdezonia
Right now when user passes a Dataset to LegacyPlugin that cannot be …
09:09 Ticket #823 (Can't create large new image) created by bdezonia
Running ImageJ2 from eclipse. Help About reports 123mb of available …

10/12/11:

16:09 Ticket #822 (Integrate dimensions, axes, calibration, etc.) created by bdezonia
In many places we work with various aspects of Datasets such as it's …
15:31 Ticket #821 (Options are not initiaized correctly) closed by bdezonia
fixed: The refactoring of fd67cb5bf07053c61300d2149fd03c91f73f24ef reintroduced …
14:58 Ticket #821 (Options are not initiaized correctly) created by bdezonia
Delete existing imagej2 prefs (on a mac imagej* from …
14:40 Ticket #745 (Display issues with rotate and crop) closed by bdezonia
fixed: The extra whitespace is no longer happening with rotate. Crop exception …
14:27 Ticket #545 (Enhance Contrast doesn't) closed by bdezonia
fixed
14:27 Ticket #545 (Enhance Contrast doesn't) reopened by bdezonia
14:25 Ticket #545 (Enhance Contrast doesn't) closed by bdezonia
fixed: This appears fixed with Curtis recent changes for setting diplay …
13:38 Ticket #634 (Add Math :: Process :: Power plugin) closed by bdezonia
fixed: Implemented in 5df8dddb64451fd560912fcc1c64d351b1cabace
13:28 Ticket #820 (Add Power to the Process > Math commands) closed by bdezonia
fixed: Implemented in 5df8dddb64451fd560912fcc1c64d351b1cabace.
13:28 Ticket #820 (Add Power to the Process > Math commands) created by bdezonia
Make raising a dataset to a power an option in the Process > Math menu.
12:59 Ticket #819 (Make a general case crop plugin) created by bdezonia
The CropImage plugin crops in X & Y. Define a generalized crop plugin …
12:47 Ticket #818 (Overlays do not interact well with crop) created by bdezonia
Crop interacts with overlays poorly: - when a selection is made and then …
12:41 Ticket #817 (Overlay issues) closed by bdezonia
fixed: Above discussion of rectangle enclosing both overlays is invalid. Fixed …
11:39 Ticket #816 (Crop can throw exception) closed by bdezonia
fixed: Closing this ticket and opening a new one: #817
11:38 Ticket #817 (Overlay issues) created by bdezonia
If you draw a second overlay on an image it is not visible. And when you …
09:46 Ticket #816 (Crop can throw exception) created by bdezonia
Open Boats. Draw an overlay. Draw another one. No outline appears for it. …

10/11/11:

15:28 Ticket #803 (Image :: Hyperstack :: Stack to Hyperstack not working) closed by bdezonia
fixed: Fixed in 4def5b7e289d3c0c62405f5fbd415ee56b4f3467 Note I changed logic …

10/10/11:

18:07 Ticket #711 (Build TRI2 with SLIMCurve) closed by aivar
fixed: Yes, this is working. Paul has also built a version of TRI2 with …
16:12 Ticket #728 (IJ2 Image Calculator differs from IJ1) closed by bdezonia
fixed: Fixed in a8e980e26945223c3780dc4efca4ea4e5a99df25
15:23 Ticket #815 (Exception when adding axes: possible race condition) created by bdezonia
Open Boats. Add axes (size 2 each) in this order (polarization, z, t). …
14:38 Ticket #814 (Update IJ1 tests to work with ImageJ 1.45q) closed by bdezonia
fixed: Updated tests using Wayne's strategy recommendations. Fixed old …
14:36 Ticket #814 (Update IJ1 tests to work with ImageJ 1.45q) created by bdezonia
The IJ1 tests have slowly aged and do not pass with IJ 1.45q. Update tests …
13:58 Ticket #813 (Provide a way for Fiji's Build System to handle our pom.xml files without ...) created by dscho
The Fiji Build system (which is also used in the Script Editor for …
12:54 Ticket #812 (Use ImageJA as Maven project to build ImageJ) created by dscho
It is very convenient to use Eclipse's debugger when trying to find …
12:22 Ticket #811 (Include a stripped-down Fiji Script Editor) created by dscho
Fiji's Script Editor uses the RSyntaxTextArea component (which is LGPL, …
11:11 Ticket #810 (Exception thrown by input dialog of ImageMath) created by bdezonia
Open Blobs and Bridge. Launch the IJ2 Image Calculator plugin. Exception …
11:03 Ticket #809 (SwingInputHarvester generalization for SDI/MDI) created by gharris
Currently, SwingInputHarvester does SwingUtils.showDialog(...), doesn't …
11:00 Ticket #808 (Add Event Handling Priority/Ordering) created by gharris
Add ability to set the order/priority of event handlers Global tools …
10:51 Ticket #807 (Add the Fiji updater to IJ2) created by dscho
The updater is really useful, and will be a crucial benefit of IJ2 over …
10:33 Ticket #470 (Make a ResetDisplay plugin) closed by gharris
fixed: Closed not part of #466
09:49 Ticket #338 (Work with Curtis on Plugin/Module IJ2 interfaces) closed by curtis
fixed: The module interfaces are pretty well fleshed out in the ij-ext project …
09:49 Ticket #806 (Migrate workflow code to ij-ext project) created by curtis
The code in source:trunk/extra/workflow should be migrated to work as part …

10/07/11:

13:50 Ticket #598 (Pass tests to Wayne) closed by curtis
fixed: Fixed in 9fc9ac6599c279bc83eb0a62d922f34517c47e37, …

10/05/11:

15:10 Ticket #805 (Add Sections to group Plugin Input Paremeters) created by gharris
Add an attribute to @Parameter, say (section="Dimensions") that creates a …
13:59 Ticket #804 (Allow plugins to cancel themselves) created by bdezonia
The ImageMath plugin needs to check that the two input datasets have …
11:55 Ticket #737 (Add out of bounds capability to Imglib OPS) closed by bdezonia
duplicate: Duplicate of #754
11:50 Ticket #739 (ShowInfo plugin needs an IJ2 version) closed by bdezonia
duplicate: Duplicate of #564
11:49 Ticket #738 (Make example work that showcases IJ2) closed by bdezonia
duplicate: Duplicate of #721
11:07 Ticket #801 (Zoom behavior differs from IJ1) closed by bdezonia
fixed: Fixed in d6455649e602554bb90199b2af7fa55f04267d09. Extended zoom levels …

10/04/11:

16:02 Ticket #803 (Image :: Hyperstack :: Stack to Hyperstack not working) created by bdezonia
If you open the T1 Head sample and run Image :: Hyperstack :: Stack to …
13:48 Ticket #802 (Imglib can hang up when memory is low) created by bdezonia
Run IJ2 and open Boats. Now repeatedly Add Axis and choose axis size as …
13:41 Ticket #743 (Add Axis plugin doesn't always work) closed by bdezonia
fixed: In 1c17b9580bff370b449b1068e93dbda3a348cbeb added code that encodes new …

09/30/11:

09:22 Ticket #526 (Handle loading of images that cannot come in at 1:1 scale) closed by gharris
fixed: Now accomodates dimensional sliders.
09:20 Ticket #471 (Big multidimensional images can display with sliders off the screen) closed by gharris
fixed: This is now working (with limited testing thus far) Images are scaled such …

09/28/11:

16:38 Ticket #800 (Edit>Fill does not always fill the complete ROI) closed by dscho
fixed: (In  changeset:c946cbf4) Fix ticket 800 When filling a region …
15:23 Ticket #605 (Display sizes do not update after deleting data along the X or Y axis) closed by bdezonia
duplicate: This bug seems to stem from the same cause as #627. I am closing this …
15:11 Ticket #801 (Zoom behavior differs from IJ1) created by curtis
ImageJ1 zooms in according to the increments: 150%, 200%, 300%, 400%, …
14:54 Ticket #800 (Edit>Fill does not always fill the complete ROI) created by dscho
Load the Gold-Lead example (File>Open Samples>AuPbSn 40), then select a …
10:39 Ticket #797 (Exception bug when adding an axis to an image) closed by bdezonia
fixed: Fixed in 4d1d8f1f6b2cfcf70d0e197055e8e4c98019618f

09/27/11:

14:29 Ticket #375 (Make CP write tags to OMERO) closed by curtis
fixed: Issue moved to [ https://jira.broadinstitute.org/browse/IMG-1539 Imaging …

09/26/11:

15:03 Ticket #799 (IJ2 Convert to Mask throws exception) created by bdezonia
Testing with 6400e57b4d0356fa4d894824ed5784e46030b05b. Open Blobs (8-bit) …
14:20 Ticket #627 (Rotating image can cause window size to be wrong) reopened by bdezonia
Do not consider this bug fixed until we have a solution for all three of …
14:20 Ticket #605 (Display sizes do not update after deleting data along the X or Y axis) reopened by bdezonia
Do not consider this bug fixed until we have a solution for all three of …
13:52 Ticket #798 (Zooming out can result in drift) created by bdezonia
Zooming out on an image drifts when zoomed less than 100%. I believe there …
13:18 Ticket #797 (Exception bug when adding an axis to an image) created by bdezonia
If you add an axis to an image it is possible to get an exception trace in …
13:05 Ticket #493 (Test legacy plugins) closed by afraser
fixed
12:16 Ticket #796 (Brightness/Contrast "auto" works differently than IJ1) created by afraser
The "auto" contrast feature in IJ2's legacy implementation of …
12:07 Ticket #795 (Respect signed 16-bit images) created by afraser
IJ2 needs to respect signed 16 bit images. The CT sample is being opened …
12:03 Ticket #794 (16 bit images should auto scale on load) created by afraser
16 bit images should use "pretty good" auto-scaling by default. (5%-95% or …
09:59 Ticket #639 (ProbeTool can throw exceptions) closed by bdezonia
fixed
09:59 Ticket #639 (ProbeTool can throw exceptions) reopened by bdezonia
09:57 Ticket #759 (IJ1/IJ2 Options synchronization bugs) closed by bdezonia
fixed: Curtis ended up fixing this in a manner similar to what I laid out above.
09:19 Ticket #788 (ProbeTool throws exceptions) closed by bdezonia
fixed: fixed in c1032df2337d62af446c9f67d5fe4252f634d03e
09:18 Ticket #789 (PixelProbe IndexOutOfBoundsException with Multi-Channel image) closed by bdezonia
fixed

09/25/11:

22:54 Ticket #793 (Make scroll wheel behavior consistent with IJ1) created by curtis
Using the mouse scroll wheel on an open image display performs different …
22:40 Ticket #792 (Support for List as an input type) created by curtis
It would be great if an input could be a List of a supported sub-type. The …
22:37 Ticket #791 (Make input widgets discoverable) created by curtis
Right now, the input harvester has a few hardcoded widget types, roughly …
20:56 Ticket #630 (Menubar in Image Windows) closed by curtis
fixed: Fixed for a while now: 6f3d15187ee573871b15d0f23f7969808b50bc22 or …
20:31 Ticket #787 (Legacy type conversions create duplicate displays) closed by curtis
fixed: Fixed in bb5f82403503a9b93359151b3df02b9689e3a128.
20:22 Ticket #783 (Add Data hatching extra slider windows) closed by curtis
fixed: Fixed in bb5f82403503a9b93359151b3df02b9689e3a128.
20:11 Ticket #790 (Arrange Windows plugins for IJ2) created by gharris
Currently, on the Windows menu, the Show All, Put Behind, Cascade & Tile …
19:55 Ticket #789 (PixelProbe IndexOutOfBoundsException with Multi-Channel image) created by gharris
Opened multi-channel.ome.tiff sample image with IJ2 OpenFile... when …

09/23/11:

10:56 Ticket #788 (ProbeTool throws exceptions) created by bdezonia
Open Bridge. Add Axis (Z, 2). Move cursor over image. Exceptions thrown …
09:25 Ticket #776 (convert to 16-bit creates duplicate display) closed by afraser
duplicate
09:23 Ticket #784 (RGB Stack display bug) closed by afraser
duplicate
09:21 Ticket #785 (RGB Color display bug) closed by afraser
duplicate
09:21 Ticket #786 (HSB Stack display bug) closed by afraser
duplicate
09:20 Ticket #787 (Legacy type conversions create duplicate displays) created by afraser
This ticket covers the following commands Image > Type > 8-Bit Image > …
08:57 Ticket #786 (HSB Stack display bug) created by afraser
Open Clown Image > Type > HSB Stack Display window is duplicated Two …
08:51 Ticket #785 (RGB Color display bug) created by afraser
Open M51 Galaxy Image > Type > RGB Color Display window is duplicated …
06:23 Ticket #784 (RGB Stack display bug) created by afraser
Open Clown Image > Type > RGB Stack Display window is duplicated ImageJ …
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