Timeline


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10/05/11:

15:10 Ticket #805 (Add Sections to group Plugin Input Paremeters) created by gharris
Add an attribute to @Parameter, say (section="Dimensions") that creates a …
13:59 Ticket #804 (Allow plugins to cancel themselves) created by bdezonia
The ImageMath plugin needs to check that the two input datasets have …
11:55 Ticket #737 (Add out of bounds capability to Imglib OPS) closed by bdezonia
duplicate: Duplicate of #754
11:50 Ticket #739 (ShowInfo plugin needs an IJ2 version) closed by bdezonia
duplicate: Duplicate of #564
11:49 Ticket #738 (Make example work that showcases IJ2) closed by bdezonia
duplicate: Duplicate of #721
11:07 Ticket #801 (Zoom behavior differs from IJ1) closed by bdezonia
fixed: Fixed in d6455649e602554bb90199b2af7fa55f04267d09. Extended zoom levels …

10/04/11:

16:02 Ticket #803 (Image :: Hyperstack :: Stack to Hyperstack not working) created by bdezonia
If you open the T1 Head sample and run Image :: Hyperstack :: Stack to …
13:48 Ticket #802 (Imglib can hang up when memory is low) created by bdezonia
Run IJ2 and open Boats. Now repeatedly Add Axis and choose axis size as …
13:41 Ticket #743 (Add Axis plugin doesn't always work) closed by bdezonia
fixed: In 1c17b9580bff370b449b1068e93dbda3a348cbeb added code that encodes new …

09/30/11:

09:22 Ticket #526 (Handle loading of images that cannot come in at 1:1 scale) closed by gharris
fixed: Now accomodates dimensional sliders.
09:20 Ticket #471 (Big multidimensional images can display with sliders off the screen) closed by gharris
fixed: This is now working (with limited testing thus far) Images are scaled such …

09/28/11:

16:38 Ticket #800 (Edit>Fill does not always fill the complete ROI) closed by dscho
fixed: (In  changeset:c946cbf4) Fix ticket 800 When filling a region …
15:23 Ticket #605 (Display sizes do not update after deleting data along the X or Y axis) closed by bdezonia
duplicate: This bug seems to stem from the same cause as #627. I am closing this …
15:11 Ticket #801 (Zoom behavior differs from IJ1) created by curtis
ImageJ1 zooms in according to the increments: 150%, 200%, 300%, 400%, …
14:54 Ticket #800 (Edit>Fill does not always fill the complete ROI) created by dscho
Load the Gold-Lead example (File>Open Samples>AuPbSn 40), then select a …
10:39 Ticket #797 (Exception bug when adding an axis to an image) closed by bdezonia
fixed: Fixed in 4d1d8f1f6b2cfcf70d0e197055e8e4c98019618f

09/27/11:

14:29 Ticket #375 (Make CP write tags to OMERO) closed by curtis
fixed: Issue moved to [ https://jira.broadinstitute.org/browse/IMG-1539 Imaging …

09/26/11:

15:03 Ticket #799 (IJ2 Convert to Mask throws exception) created by bdezonia
Testing with 6400e57b4d0356fa4d894824ed5784e46030b05b. Open Blobs (8-bit) …
14:20 Ticket #627 (Rotating image can cause window size to be wrong) reopened by bdezonia
Do not consider this bug fixed until we have a solution for all three of …
14:20 Ticket #605 (Display sizes do not update after deleting data along the X or Y axis) reopened by bdezonia
Do not consider this bug fixed until we have a solution for all three of …
13:52 Ticket #798 (Zooming out can result in drift) created by bdezonia
Zooming out on an image drifts when zoomed less than 100%. I believe there …
13:18 Ticket #797 (Exception bug when adding an axis to an image) created by bdezonia
If you add an axis to an image it is possible to get an exception trace in …
13:05 Ticket #493 (Test legacy plugins) closed by afraser
fixed
12:16 Ticket #796 (Brightness/Contrast "auto" works differently than IJ1) created by afraser
The "auto" contrast feature in IJ2's legacy implementation of …
12:07 Ticket #795 (Respect signed 16-bit images) created by afraser
IJ2 needs to respect signed 16 bit images. The CT sample is being opened …
12:03 Ticket #794 (16 bit images should auto scale on load) created by afraser
16 bit images should use "pretty good" auto-scaling by default. (5%-95% or …
09:59 Ticket #639 (ProbeTool can throw exceptions) closed by bdezonia
fixed
09:59 Ticket #639 (ProbeTool can throw exceptions) reopened by bdezonia
09:57 Ticket #759 (IJ1/IJ2 Options synchronization bugs) closed by bdezonia
fixed: Curtis ended up fixing this in a manner similar to what I laid out above.
09:19 Ticket #788 (ProbeTool throws exceptions) closed by bdezonia
fixed: fixed in c1032df2337d62af446c9f67d5fe4252f634d03e
09:18 Ticket #789 (PixelProbe IndexOutOfBoundsException with Multi-Channel image) closed by bdezonia
fixed

09/25/11:

22:54 Ticket #793 (Make scroll wheel behavior consistent with IJ1) created by curtis
Using the mouse scroll wheel on an open image display performs different …
22:40 Ticket #792 (Support for List as an input type) created by curtis
It would be great if an input could be a List of a supported sub-type. The …
22:37 Ticket #791 (Make input widgets discoverable) created by curtis
Right now, the input harvester has a few hardcoded widget types, roughly …
20:56 Ticket #630 (Menubar in Image Windows) closed by curtis
fixed: Fixed for a while now: 6f3d15187ee573871b15d0f23f7969808b50bc22 or …
20:31 Ticket #787 (Legacy type conversions create duplicate displays) closed by curtis
fixed: Fixed in bb5f82403503a9b93359151b3df02b9689e3a128.
20:22 Ticket #783 (Add Data hatching extra slider windows) closed by curtis
fixed: Fixed in bb5f82403503a9b93359151b3df02b9689e3a128.
20:11 Ticket #790 (Arrange Windows plugins for IJ2) created by gharris
Currently, on the Windows menu, the Show All, Put Behind, Cascade & Tile …
19:55 Ticket #789 (PixelProbe IndexOutOfBoundsException with Multi-Channel image) created by gharris
Opened multi-channel.ome.tiff sample image with IJ2 OpenFile... when …

09/23/11:

10:56 Ticket #788 (ProbeTool throws exceptions) created by bdezonia
Open Bridge. Add Axis (Z, 2). Move cursor over image. Exceptions thrown …
09:25 Ticket #776 (convert to 16-bit creates duplicate display) closed by afraser
duplicate
09:23 Ticket #784 (RGB Stack display bug) closed by afraser
duplicate
09:21 Ticket #785 (RGB Color display bug) closed by afraser
duplicate
09:21 Ticket #786 (HSB Stack display bug) closed by afraser
duplicate
09:20 Ticket #787 (Legacy type conversions create duplicate displays) created by afraser
This ticket covers the following commands Image > Type > 8-Bit Image > …
08:57 Ticket #786 (HSB Stack display bug) created by afraser
Open Clown Image > Type > HSB Stack Display window is duplicated Two …
08:51 Ticket #785 (RGB Color display bug) created by afraser
Open M51 Galaxy Image > Type > RGB Color Display window is duplicated …
06:23 Ticket #784 (RGB Stack display bug) created by afraser
Open Clown Image > Type > RGB Stack Display window is duplicated ImageJ …

09/22/11:

16:33 Ticket #783 (Add Data hatching extra slider windows) created by bdezonia
Open a 2d sample image (like Lena or Boats). Add an axis like Z or T or …
16:01 Ticket #782 (Flip horizontally [ij2] throws exception on organ of corti) closed by bdezonia
fixed
15:49 Ticket #719 (Display painting bug) closed by curtis
fixed: (In [3969]) Use Swing event service for now. This avoids a race condition …
15:43 Ticket #782 (Flip horizontally [ij2] throws exception on organ of corti) created by afraser
Open Organ of Corti run Flip Horizontally [IJ2] I get: [ERROR] Module …
14:33 Ticket #781 (Window/Level broken) created by afraser
This is filed under legacy but may be a display refresh problem. Plugin …
14:19 Ticket #780 (Color Balance broken) created by afraser
I can't seem to make this plugin do anything. Period. Tested it on …
14:02 Ticket #344 (Create OME-XML to 2D Stitcher conversion utility for Fiji) closed by curtis
fixed: I created the following plugins to address this issue: * …
13:58 Ticket #483 (File/New Action) closed by curtis
fixed: [source:trunk/core/io/src/main/java/imagej/io/plugins/NewImage.java Such a …
13:33 Ticket #779 (Brightness/Contrast [IJ2] bug) created by afraser
Open clown.jpg Image > Color >Edit Colors Color mode: Color OK (image …
12:45 Ticket #778 (Nile Bend (1.9M) doesn't display) created by afraser
Nile Bend (1.9M) sample image appears to load but never displays. I …
12:27 Ticket #777 (Some images render differently in IJ2) created by afraser
Boats.gif appears more contrasty than the IJ1 version. I've confirmed …
12:12 Ticket #776 (convert to 16-bit creates duplicate display) created by afraser
Open Clown.jpg Image > Type > 16-bit Duplicates the display and runs the …
12:06 Ticket #775 (Convert to 8-bit broken) created by afraser
Open Clown.jpg Image > Type > 8-bit Duplicates the display and runs the …
11:55 Ticket #774 (convert to 8-bit color broken) created by afraser
open clown.jpg Image > type > 8-bit Color 2 Problems: 1) The display is …
09:33 Ticket #773 (Reshaping via "Properties" sometimes crashes IJ display) created by afraser
Open the Mitosis 5D stack Image > Properties (Ctrl+Shift+P) set Channels = …

09/21/11:

18:42 Ticket #639 (ProbeTool can throw exceptions) closed by dscho
fixed: Fixed in 3d3ee0330a1a43fe2f53adb9c0da81d30d599458.
18:41 Ticket #628 (Zoom is broken) closed by dscho
fixed: Fixed in 768071be333edcd8b8b4720066ff456f9bd9fbb4.
18:31 Ticket #772 (Overlay > Add Image doesn't work) created by afraser
Overlay > Add Image doesn't appear to do anything unless the added image …
18:19 Ticket #771 (Reduce dimensionality doesn't respect selected plane) created by afraser
Try opening the mitosis 5d sample and running reduce dimensionality on it. …
17:59 Ticket #713 (Zoom to selection is broken) closed by dscho
fixed: (In [3963]) Fix ticket 713 Zoom to selection was broken because the …
12:34 Ticket #753 (Parallelize image assignment in Imglib OPS) closed by bdezonia
fixed: ComplexInageAssignment completed. Refactor done.
12:04 Ticket #770 (Image renders differently in IJ1 & IJ2) created by afraser
Attached are images that I generated by Z-Projecting the first 10 frames …
11:34 Ticket #769 (Stack to Images processes slices out of order) created by afraser
This could be a concern for people who've written macros that assume the …
11:08 Ticket #768 (Built in LUTs don't work) created by afraser
Tested on Boats sample Image > Look up tables > Fire image doesn't …

09/20/11:

22:34 Ticket #767 (tif stack loads differently in IJ1 & 2) created by afraser
I'm not sure exactly what to file this under, but basically, I used IJ1 to …
18:15 Ticket #766 (Hyperstack to Stack bug) created by afraser
Open the mitosis 5d stack sample run Image > Hyperstacks > Hyperstack to …
12:03 Ticket #765 (Import LUT does nothing) created by afraser
Tested on Bridge sample. Try the attached LUT... the image doesn't change …
10:39 Ticket #764 (New image filled with wrong value) created by afraser
File > New (legacy) type: 16 bit fill with: white Resultant image is …

09/19/11:

14:53 Ticket #626 (Newly opened images have wrong window size) closed by gharris
fixed: Turns out, we needed to add an override for Dimension getPreferredSize() …
14:32 Ticket #763 (Add Sizing Constraint of Windows on Desktop/Workspace) created by gharris
Account for the bounds of the desktop/workspace when sizing the window …

09/16/11:

14:04 Ticket #762 (IJ1 Cut/Copy/Paste gets tangled with IJ2 functions on Overlays) created by afraser
This is a tough one to describe since I've seen just about every …
13:29 Ticket #761 (Selection > Make Inverse throws exception) created by afraser
Create a new image and draw an overlay in it, then choose Edit > Selection …
13:13 Ticket #760 (IJ1 Plugins that hatch threads are problematic) created by bdezonia
Currently LegacyPlugin relies on the assumption that the plugin that gets …
13:05 Ticket #759 (IJ1/IJ2 Options synchronization bugs) created by bdezonia
The options synchronization code that shipped with alpha 5 is not correct. …
12:24 Ticket #758 (Analyze Particles reports different values than in IJ1) created by afraser
To reproduce: open Bat Cochlea Volume and scrub to Z=28 Run Analyze …
11:13 Ticket #757 (Discrepancies in "Measure" values) created by afraser
Mean, Min and Max don't compute the same as they did before in some cases. …
11:03 Ticket #756 (Threshold broken) created by afraser
To replicate: Open Samples > Cell Colony Image > Color > Split Channels …

09/15/11:

10:19 Ticket #755 (Enhance Imglib OPS' image assignment classes) created by bdezonia
In the original implementation of OPS (rev2) you could update listeners …
10:02 Ticket #754 (Enhance Imglib OPS to support out of bounds access to Img data) created by bdezonia
Enhance RealImageFunction and ComplexImageFunction to have alternate …
09:59 Ticket #753 (Parallelize image assignment in Imglib OPS) created by bdezonia
Make RealImageAssignment and ComplexImageAssignment do their work in a …

09/14/11:

13:15 Ticket #752 (IJ2 options values do not reflect changes from IJ1 plugins/macros) closed by bdezonia
fixed: Found the issue after alpha 5 released. Fixed in …
13:14 Ticket #752 (IJ2 options values do not reflect changes from IJ1 plugins/macros) created by bdezonia
If IJ1 changes a global value that is used in an IJ2 options dialog it is …
11:20 Ticket #751 (Legacy translation test cases) created by bdezonia
Here are a couple use cases to support: User opens bridge, adds a channel …

09/13/11:

16:35 Milestone imagej-2.0-alpha5 completed
An alpha release demonstrating the new class hierarchy, plugin …
13:53 Ticket #750 (Anonymous usage statistics service) created by curtis
We should create a service for monitoring anonymous usage statistics and …
10:24 Ticket #749 (Window menu bug) created by bdezonia
Open three sample images. Select the first image. No windows are displayed …
09:42 Ticket #748 (Keep IJ2 options in sync with IJ1 globals) closed by bdezonia
fixed: Fixed in a4dadc2c70dcf64253eb1c64d7dedc1c4dbf9d1d

09/12/11:

15:06 Ticket #372 (Change location of preference keys) closed by bdezonia
fixed: Removed SettingsKeys completely in …
15:03 Ticket #748 (Keep IJ2 options in sync with IJ1 globals) created by bdezonia
IJ1 has a few public variables (such as FloatBlitter.dbzValue or lineWidth …
15:01 Ticket #365 (Interoperability with legacy IJ_Prefs.txt) closed by bdezonia
fixed: Much code changed by Curtis and Barry. Major commit in …
14:58 Ticket #373 (Setup preferences correctly at program startup) closed by bdezonia
fixed: Fixes by Curtis and Barry. Final commit in …
13:48 Ticket #747 (Allow a plugin parameter to be both an input & an output) created by curtis
Sometimes it may make sense for a plugin parameter to be both an input and …
10:40 Ticket #733 (Exception in Split Channels) closed by afraser
fixed: looks like Lee fixed this.
10:35 Ticket #704 (Bug in AbstractRegionOfInterest) closed by leek
fixed: I've fixed this and reported to Christian, just didn't see that it was …

09/09/11:

13:10 Ticket #734 (Close Window throws exception) closed by gharris
worksforme: Works for me.

09/07/11:

14:16 Ticket #692 (Exception thrown for BigInteger parameters) closed by curtis
fixed: Fixed in 76e206b51e4ae451eef74dd1ca44fb33ddd9d55c. The problem was that …

09/06/11:

16:23 Ticket #746 (Delete Axis can fail) created by bdezonia
Sometimes Delete Axis fails to remove an axis (or the right one). You can …
14:40 Ticket #672 (Delete Axis can throw a concurrent modification exception) closed by bdezonia
fixed: refixed with cec28bc4630ec860ca5923887f975a5ccc0ce53d
13:02 Ticket #745 (Display issues with rotate and crop) created by bdezonia
If you rotate an image there is extra whitespace in the display. If you …
12:50 Ticket #744 (Verify Imglib OPS function definitions & inputs) created by bdezonia
A goodly number of operations were added to OPS recently - both in the …
12:44 Ticket #743 (Add Axis plugin doesn't always work) created by bdezonia
Open Organ of Corti and run Add Axis. Sometimes it doesn't add the new …
12:16 Ticket #742 (The App might need to do event dispatching) created by bdezonia
Before Grant's refactor of the Display hierarchy (and also Curtis' later …
12:13 Ticket #741 (Update the website re: IJ1 compatibility) created by bdezonia
Update the imagejdev.org website to explain how we are hadnling …
12:11 Ticket #740 (Stack to Images slow) created by bdezonia
The stack to images IJ1 command can run slowly. Determine if its too slow …
12:09 Ticket #739 (ShowInfo plugin needs an IJ2 version) created by bdezonia
The Show Info plugin reports things like pixel type. This cannot work …
12:02 Ticket #672 (Delete Axis can throw a concurrent modification exception) reopened by bdezonia
As a result of the recent display refactoring this bug has been …
11:28 Ticket #738 (Make example work that showcases IJ2) created by bdezonia
We have an image (Day 1 Naked NB positive 1-2007-0055.zvi) which has 12 …
11:22 Ticket #737 (Add out of bounds capability to Imglib OPS) created by bdezonia
In OPS image data support exists in RealImageFunction and …
11:20 Ticket #736 (Update dynamic plugins that deal with axis ranges) created by bdezonia
Some of the DynamicPlugins are interested in the min and max values of the …
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