Timeline
06/09/11:
- 17:18 Ticket #591 (First steps for OverlayManager) created by
- code a UI that lists overlays (by name or otherwise) and updates when they …
- 14:58 Ticket #585 (Fix brightness & contrast behavior in BrightnessContrast plugin) reopened by
- 14:18 Ticket #585 (Fix brightness & contrast behavior in BrightnessContrast plugin) closed by
- fixed
- 12:48 Ticket #590 (Displayed images sometimes have extra space on the right or bottom edges) created by
- The window sizing code does not size images exactly. If you load Bridge …
- 12:22 Ticket #589 (AbstractDatasetView assumes Dataset has at least one channel) closed by
- fixed: Fixed in 5f7062d65525db7c2eafd8bddd1ce35ffe5c3dda.
- 11:41 Ticket #589 (AbstractDatasetView assumes Dataset has at least one channel) created by
- AbstractDatasetView can throw exceptions for Datasets that do not have a …
06/08/11:
- 16:26 Ticket #588 (Improve DatasetHarmonizer to maintain Dataset axis ordering) closed by
- fixed
- 16:26 Ticket #588 (Improve DatasetHarmonizer to maintain Dataset axis ordering) created by
- If you have an axis ordering incompatible with IJ1 (something other than …
- 16:23 Ticket #587 (Improve support of multichannel color rgb images in the legacy layer) closed by
- fixed
- 16:23 Ticket #587 (Improve support of multichannel color rgb images in the legacy layer) created by
- It is possible for an IJ! plugin to return a multichannel Color RGB image. …
- 15:35 Ticket #586 (Exception thrown on type convert to RGB Color) created by
- Open clown image, convert type to some IJ2 type (say Unsigned 12 or 16 bit …
- 14:19 Ticket #585 (Fix brightness & contrast behavior in BrightnessContrast plugin) created by
- The brightness & contrast sliders mostly work, but are reset to 128 every …
- 14:17 Ticket #584 (Get Open Recent menu working) created by
- The "Open Recent" menu is not present in IJ2. We need to implement support …
- 14:17 Ticket #583 (Smarter memory management/detection) created by
- When opening very large images (particularly those larger than available …
- 14:15 Ticket #582 (Better support for selections (e.g., for Crop plugin)) created by
- Right now, CropImage operates on a Dataset together with a bounding box …
- 11:59 Ticket #565 (Apply results of EditColors plugin to active Dataset) closed by
- fixed: Right, the plugin was working at one point, before the addition of the …
- 10:18 Ticket #581 (OverlayTranslator does not handle "not" Rois correctly) created by
- OverlayTranslatorTest has a test which is currently not marked with @Test …
- 09:58 Ticket #580 (Support ctrl+click to zoom out) created by
- With the zoom tool, right click will zoom out. (This works in IJ1 as …
- 09:55 Ticket #579 (Support for multiple datasets in the same display) created by
- We still have some work to do on the robustness of the canvas and …
- 09:53 Ticket #578 (IJ1 Channels Tool does not work) created by
- The legacy Channels Tool plugin basically doesn't work at all. The …
- 09:52 Ticket #577 (Keyboard shortcuts for dimensional sliders) created by
- The channel scrollbar cannot be dragged with the scroll wheel, regardless …
- 09:50 Ticket #576 (Visual feedback for composite channel slider changes) created by
- Open an RGB image. It opens as a window with 3 channels, but dragging the …
06/07/11:
- 17:26 Ticket #555 (Convention for how a plugin handles no image/view selected) closed by
- fixed: Rather than a companion interface, as of …
- 17:21 Ticket #474 (Image Calculator intialization throws exception) closed by
- fixed: This should be fixed in 14f53919701b09367691844cfe1cf9dd2202b9b9.
- 16:22 Ticket #575 (IJ1 can kill stack) created by
- There is code in IJ1::ImagePlus::setProcessor2() which can delete an …
- 15:34 Ticket #574 (C&Z getting swapped again) closed by
- fixed: LegacyUtils:setDatasetPlanes() was incorrect. Fixed in …
- 13:47 Ticket #574 (C&Z getting swapped again) created by
- As of e728eefe2ebb11a9530bf2a8b8d44ce8bb27d091: Open ome tiff image …
- 13:43 Ticket #553 (Ij2 can get plugin confused) closed by
- worksforme: Can no longer duplicate as of e728eefe2ebb11a9530bf2a8b8d44ce8bb27d091. …
- 13:36 Ticket #573 (Composite image info lost sometimes) created by
- Open Organ of Corti. Use the IJ1 Scale plugin to scale in X & Y by 1.2. …
- 13:29 Ticket #572 (Reorganize the Image Type submenu command names) closed by
- fixed
- 13:29 Ticket #572 (Reorganize the Image Type submenu command names) created by
- The Image Type submenu looks disorganized. Make command names more user …
- 13:28 Ticket #571 (Simplify DataObject interface) closed by
- fixed
- 13:28 Ticket #571 (Simplify DataObject interface) created by
- DatObject interface exposes methods register() and delete(). Perhaps this …
- 13:23 Ticket #540 (Convolution oriented plugins wrong in 8-bit case) closed by
- fixed: Further testing showed it was broken for 8 and 16 bit data. Only correct …
- 11:52 Ticket #570 (Test: make sure that firing of SwingOverlayView::figureRemoved() removes ...) created by
- SwingOverlayView::figureRemoved() was fixed to attempt to delete the …
- 10:41 Ticket #569 (Image Type submenu : IJ1 plugins located poorly) created by
- A couple IJ1 plugins show up in the IJ2 Image Type submenu in annoying …
- 10:15 Ticket #566 (IJ2 Datasets are not always getting deleted) closed by
- fixed: Inspection seems to show that Datasets only register with the …
06/06/11:
- 16:36 Ticket #568 (Wrong LUTs getting set) created by
- open blobs open clown repeat the following sequence: close blobs open …
- 12:47 Ticket #508 (Preserve IJ1 metadata) closed by
- fixed: Found similar ticket (#516). Moved this info in there and am closing this …
- 12:20 Ticket #548 (Type changer not working with color data correctly) closed by
- fixed: Created MixedModeTranslator that is invoked for multichannel color …
- 11:28 Ticket #567 (Validate Contrast/Brightness values) created by
- ContrastBrightness plugin needs to be validated in terms of the values …
- 11:27 Ticket #384 (Display autoscaling) closed by
- fixed
- 11:15 Ticket #491 (Review JHotDraw integration in OME Shoola) closed by
- fixed
06/03/11:
- 23:00 Milestone biweekly-2011: May-23 to Jun-03 completed
- Tasks from 2011-May-23 through 2011-Jun-03.
- 16:03 Ticket #566 (IJ2 Datasets are not always getting deleted) created by
- Datasets do not seem to go away always. A scenario that shows this: open …
- 15:06 Ticket #565 (Apply results of EditColors plugin to active Dataset) created by
- The EditColors dialog is not hooked to anything and does not update any …
- 12:41 Ticket #564 (Write pure IJ2 version of Image :: Show Info menu item) created by
- The Image :: Show Info command cannot show the correct info for all the …
- 09:52 Ticket #562 (Legacy layer can corrupt C/Z axis ordering) closed by
- fixed: Fixed in b2c057f7d9cf12855859d288f69e41e17b078d28
- 09:47 Ticket #384 (Display autoscaling) reopened by
- Actually, the ContrastBrightness plugin needs to be validated in terms of …
- 09:45 Ticket #384 (Display autoscaling) closed by
- fixed: Autoscaling is implemented in AbstractDatasetView by 1) using the min/max …
06/02/11:
- 17:22 Ticket #563 (Improve how legacy layer handles data that cannot be represented in IJ1) created by
- Right now if you pass a Dataset to the legacy layer that has some axis not …
- 17:14 Ticket #556 (Imported image reverses role of C & Z axis) closed by
- worksforme: Original issue cannot be duplicated with latest code. Assume fixed. …
- 17:12 Ticket #562 (Legacy layer can corrupt C/Z axis ordering) created by
- Use File :: Import :: BioFormats. Select the …
- 16:45 Ticket #561 (Test: can GrayscaleTranslator ever make a COLOR or GRAYSCALE ...) created by
- Code inspection leads me to believe that the legacy layer (via …
- 16:40 Ticket #560 (Performance improve Import BioFormats) created by
- If you open multichannel-4d-series.ome.tif from the ome-tiff directory on …
- 16:36 Ticket #559 (The legacy layer only supports 8-bit ColorTables) created by
- Currently the legacy layer only works with 8-bit ColorTables/LUTs. Put in …
- 16:29 Ticket #538 (Improve legacy data support) closed by
- fixed: Done
- 16:23 Ticket #525 (Update LUTs correctly in DatasetHarmonizer) closed by
- fixed: This code in place. Final touches added in …
- 16:16 Ticket #558 (To Binary Mask causes slider slowdown) created by
- I don't know much about the To Binary Mask command or how it should …
- 13:04 Ticket #144 (Set up logrotate on skynet) closed by
- fixed: Both skynet and dev now have logrotate rotating their web logs weekly. The …
06/01/11:
- 23:30 Milestone imagej-2.0-alpha3 completed
- Third alpha release demonstrating the new class hierarchy, plugin …
- 20:13 Ticket #557 (Add permanent caching support to ImgIOUtils) created by
- The ImgIOUtils class currently caches HTTP downloads of images in a …
- 15:48 Ticket #556 (Imported image reverses role of C & Z axis) created by
- Use File :: Import :: BioFormats. Select the …
- 15:28 Ticket #555 (Convention for how a plugin handles no image/view selected) created by
- If the plugin relies on there being a view selected, it may do this in its …
- 14:57 Ticket #554 (File::New::Hyperstack results in duplicate images being created/displayed) created by
- Run File::New::Hyperstack. Choose c = 3, z = 1, t = 1. Choose Composite. …
- 14:52 Ticket #553 (Ij2 can get plugin confused) created by
- Do file :: import :: bioformats and feed it multichannel.ome.tiff from the …
- 12:34 Ticket #544 (Exception thrown on Dataset::delete()) closed by
- worksforme: Cannot duplicate with version 0a1002ec77ab2f2ee3da645b88791fcaed8305b7.
- 11:19 Ticket #538 (Improve legacy data support) reopened by
- 11:18 Ticket #538 (Improve legacy data support) closed by
- fixed: The remaining issues on this ticket are encompassed in ticket #546. …
05/31/11:
- 16:45 Ticket #248 (Bio-Formats ITK plug-in - populate physical pixel sizes) closed by
- fixed: Issue resolved in …
- 15:31 Ticket #552 (Make it possible to pass a ImgFactory to ImageTranslator::createDataset()) created by
- RIght now ImageTranslator::createDataset() always makes a PlanarAccess …
- 15:25 Ticket #551 (Improve legacy layer) created by
- The legacy layer is now well fleshed out. Write more comprehensive tests …
- 15:06 Ticket #550 (Convert RGB to 8-bit color displays as grey) created by
- If you convert Clown to 8-bit color it still displays as grey. The LUT …
- 14:36 Ticket #549 (Improve legacy support of bit typed data) created by
- IJ1 treats bit masks as unsigned byte images with two values (0 & 255). If …
- 14:26 Ticket #548 (Type changer not working with color data correctly) created by
- Open Clown. Change Image :: Type to 12-bit. Display does not change. …
05/27/11:
- 09:20 Ticket #498 (Speed up RGBImageTranslator?) closed by
- wontfix: After further thought I think it does not make sense to change this. At …
- 08:58 Ticket #547 (Make pure IJ2 Revert plugin) created by
- Due to limitations laid out in bug #531 and bug #528 we need a pure IJ2 …
- 08:40 Ticket #247 (Add Write functionality to the Bio-Formats ITK plug-in) closed by
- fixed: The write method has been implemented for the Jace and Pipes BFITK plug-in …
05/26/11:
- 16:06 Ticket #378 (Fix buggy Number parameter widgets) closed by
- fixed: In 63fe2c383daa27575ee2fef46f7db10a901e4e9f the Swing number widget code …
- 15:39 Ticket #546 (Minimize time spent harmonizing Datasets/ImagePluses) created by
- Right now, in LegacyPlugin, prePluginHarmonization() code is run that …
- 14:21 Ticket #532 (Make legacy layer smarter about handling new IJ2 data types) closed by
- fixed: Fixed (revision unknown but shortly before …
- 14:18 Ticket #545 (Enhance Contrast doesn't) created by
- Running legacy plugin Process :: Enhance Contrast does not work unless you …
- 13:46 Ticket #544 (Exception thrown on Dataset::delete()) created by
- Open Blobs sample Image. Choose Image :: Rename. Now close image window. …
05/25/11:
- 13:49 Ticket #543 (Add check for final @Parameter field) closed by
- fixed: Fixed in cecdd1ae4071a7339a7085e369a95c37653b0fad, using resolved as …
- 10:11 Ticket #543 (Add check for final @Parameter field) created by
- If a @Parameter annotated field is final, an input widget is presented and …
05/24/11:
- 15:45 Ticket #542 (Change legacy layer so that it maintains Display<-->ImagePlus mappings) created by
- Unlike IJ1, IJ2 allows one to view the same set of data in two different …
- 13:19 Ticket #528 (Have LegacyImageMap track Dataset events) closed by
- fixed: closing and tracking in ticket #531
- 10:26 Ticket #533 (DisplayPostProcessor should not generate DatasetChangedEvents) closed by
- fixed: made sure dataset events getting triggered in all places they need to in …
- 09:49 Ticket #539 (For given file probe reports different pixels values between IJ1 & IJ2.) closed by
- fixed: fixed in 7cadcce428524a961cebf8761f93af945100b73c
- 09:21 Ticket #541 (Invert image in IJ2 not always same as IJ1 invert) closed by
- fixed
05/23/11:
- 16:41 Ticket #541 (Invert image in IJ2 not always same as IJ1 invert) created by
- In IJ1 inversion of an image is relative to 0/255. In IJ2, for generality, …
- 16:39 Ticket #540 (Convolution oriented plugins wrong in 8-bit case) created by
- IJ1 has special case code for convolve3x3() on a ByteProcessor. IJ2 code …
- 15:31 Ticket #539 (For given file probe reports different pixels values between IJ1 & IJ2.) created by
- The attached file displays differently in IJ1 & IJ2. At first I thought it …
- 15:01 Ticket #248 (Bio-Formats ITK plug-in - populate physical pixel sizes) reopened by
- In the Jace implementation there is a NullPointerException at the first …
- 14:59 Ticket #538 (Improve legacy data support) created by
- The DatasetHarmonizer and the LegacyImageMap have evolved. They are …
- 14:44 Ticket #529 (IJ2 not setting current ImagePlus at correct time) closed by
- fixed: Fixed in 1a3c034a8d2f4436ab57f3e9b00aa9022cdc3ac1. …
- 14:42 Ticket #530 (Make legacy harmonization bidirectional) closed by
- fixed
- 14:42 Ticket #530 (Make legacy harmonization bidirectional) reopened by
- 14:42 Ticket #530 (Make legacy harmonization bidirectional) closed by
- fixed: Initial implementation in 1a3c034a8d2f4436ab57f3e9b00aa9022cdc3ac1. Some …
- 11:52 Ticket #537 (Update ROIs correctly in DatasetHarmonizer) created by
- The legacy layer needs to translate ROIs back and forth between IJ1 and …
- 11:26 Ticket #172 (Improve jar2lib's CMake build file to assemble final resources post-build) closed by
- fixed: Fixed with svn revision 7709 * updated cmake velocity template to …
- 11:21 Ticket #536 (Decide on ROI Persistence Mechanism) created by
- We need to decide on the persistence mechanism for ROIs. JHotDraw SVG …
- 10:56 Ticket #423 (Z Project can fail with an exception) closed by
- fixed
05/20/11:
- 23:00 Milestone biweekly-2011: May-09 to May-20 completed
- Tasks from 2011-May-09 through 2011-May-20.
- 17:38 Ticket #481 (Refresh Display on DatasetChanged Event) closed by
- fixed: Both DatasetView and SwingDisplayWindow listen for DatasetUpdatedEvents …
- 17:16 Ticket #494 (Bugs displaying gradient images) closed by
- duplicate: Duplicate of #384.
- 17:06 Ticket #479 (Should Window, Key and Mouse Events extend DisplayEvent) closed by
- invalid: No comment in two weeks—closing ticket. If it comes up again we can …
- 17:04 Ticket #521 (Post JHotDraw incorporation none of the Tools work) closed by
- fixed: The tools are ostensibly working again. Zoom and probe still have some …
- 16:45 Ticket #534 (Image::Rename does not work) closed by
- fixed: Fixed in 9aafd7ecfc0a85f4bea25d6d37514304fc532c6f. Harmonization takes …
- 16:35 Ticket #379 (Add support for plugin previews) closed by
- fixed: Initial preview feature added in 37c47161459c98b3bdfbe77d1ae375668054e1e8. …
- 15:57 Ticket #535 (Add dirty bit tracking to Dataset) closed by
- fixed: Added in 40be2ad269d824182a2ef35b8ff8881dbadb25b4. Tracking in Dataset …
- 15:53 Ticket #535 (Add dirty bit tracking to Dataset) created by
- Create a dirty bit facility for Dataset. Update flag when data changes …
- 14:54 Ticket #534 (Image::Rename does not work) created by
- Open any sample. Choose Image :: Rename and enter a new name. The window …
- 14:47 Ticket #533 (DisplayPostProcessor should not generate DatasetChangedEvents) created by
- We bootstrapped the display architecture on the idea that the …
- 14:11 Ticket #532 (Make legacy layer smarter about handling new IJ2 data types) created by
- Freshly start IJ2. Create a gradient image that is 12-bit. Run the Image …
- 14:06 Ticket #531 (Legacy layer has limitations in regard to plugins that change data types) created by
- Open Bridge sample. Change type to 12-bit. Find Edges. File Revert. Data …
- 14:03 Ticket #530 (Make legacy harmonization bidirectional) created by
- From previous instantiations of IJ1 plugins there may be a remembered …
- 13:56 Ticket #529 (IJ2 not setting current ImagePlus at correct time) created by
- Open Bridge sample. Then create a Gradient image. Choose IJ1 plugin Rotate …
- 13:52 Ticket #528 (Have LegacyImageMap track Dataset events) created by
- The LegacyImageMap needs to track at least some of the Dataset events …
- 13:46 Ticket #527 (Exceptions thrown with 12-bit revert) closed by
- fixed: Closing this ticket and opening a series of related tickets
- 13:15 Ticket #377 (Support for color parameters) closed by
- fixed: Added in 4c2a819d5a11904148756c09a61c8379ef453b8d, and fully working as of …
- 10:08 Ticket #527 (Exceptions thrown with 12-bit revert) created by
- Open Bridge sample. Convert type to 12-bit. Do File::Revert. Multiple …
- 09:45 Ticket #519 (Image :: Type menu does unnecessary work) closed by
- fixed: fixed in 34584b1b27aff24a6183d31d87316862b1f552c1
05/19/11:
- 17:30 Ticket #526 (Handle loading of images that cannot come in at 1:1 scale) created by
- Since the adoption of JHotDraw the code that handled the loading and …
- 17:28 Ticket #518 (NullPtrExcep thrown when changing type of image) closed by
- fixed: Found that scale initialized to 0 in CanvasHelper. Now defaulting to 1 and …
- 15:43 Ticket #511 (Image window sometimes does not resize upon dimension change) closed by
- fixed: As of 4db5647609829d3e9bad8bee379a36ce582e1a00 (sometime after replacement …
- 13:50 Ticket #235 (Propagate change to ImageStack::getImageArray() throughout IJ) closed by
- fixed: Recently made the DatasetHarmonizer reset plane references in a Dataset …
- 13:10 Ticket #513 (Image::Type::HSB Stack plugin results display poorly) closed by
- fixed: Curtis found sliders not updating issue by …
- 13:05 Ticket #524 (DatasetView:setPosition() called more often than expected) closed by
- fixed: Fixed in 267a33831ffeddb55ce12b6d172325010c50e508.
- 13:01 Ticket #525 (Update LUTs correctly in DatasetHarmonizer) created by
- DatasetHarmonizer does nothing about bringing LUTs across from IJ1. So if …
- 12:37 Ticket #524 (DatasetView:setPosition() called more often than expected) created by
- When you scroll within a slider of a 3 or more dimensional image …
- 12:03 Ticket #523 (Improve Jar2Lib to proxy a set of core Java classes) closed by
- fixed: This feature was implemented in revision 7707 through a "-core …
05/18/11:
- 12:10 Ticket #523 (Improve Jar2Lib to proxy a set of core Java classes) created by
- Currently it's not entirely clear how Jace chooses which core Java classes …
- 10:46 Ticket #522 (Determine how to approach HSB support) created by
- IJ1 has some support for HSB images. You can take a RGB image, use …
- 10:09 Ticket #521 (Post JHotDraw incorporation none of the Tools work) created by
- The tools no longer work. You can select them but can't do anything with …
- 10:04 Ticket #520 (Running data changing plugins seems to have no effect) closed by
- fixed: Nobody was reacting to DatasetUpdatedEvents. Made DatasetView call …
- 10:03 Ticket #520 (Running data changing plugins seems to have no effect) created by
- Post JHotDraw support: Choose a Process menu entry like find edges. …
05/17/11:
- 12:47 Ticket #519 (Image :: Type menu does unnecessary work) created by
- If you choose an Image :: Type submenu item that matches your current type …
- 12:45 Ticket #517 (TypeChanger only supports planar Imgs) reopened by
- Actually this is the case as it is written for changeType(). Make …
- 12:41 Ticket #517 (TypeChanger only supports planar Imgs) closed by
- invalid: After investigation I see that TypeCHanger supports user specified …
- 12:26 Ticket #518 (NullPtrExcep thrown when changing type of image) created by
- If you change the type of an image via Image :: Type submenu the image …
- 11:48 Ticket #517 (TypeChanger only supports planar Imgs) created by
- Looking at TypeChanger it is apparent that it creates a new Img of planar …
- 09:09 Ticket #516 (Add arbitrary properties to Metadata) created by
- Wondering if we want to add something like properties to the ImgPlus …
05/12/11:
- 16:24 Ticket #515 (Performance improve OPS) created by
- IJ2 relies on the performance of OPS' AssignOperation. That class works on …
- 12:26 Ticket #500 (Rename RegionCursor) closed by
- fixed
05/11/11:
- 15:24 Ticket #514 (Increase the quality of IJ2's color display results) created by
- IJ2's display of color data needs improvement. The easiest way to see this …
- 15:21 Ticket #513 (Image::Type::HSB Stack plugin results display poorly) created by
- If you load clown and run the Image::Type:HSB Stack plugin the results are …
- 15:14 Ticket #512 (IJ1's Image::Type::HSB menu command is not working) closed by
- fixed: fixed issue in LegacyImageMap. returned data looks correct though IJ2's …
- 14:47 Ticket #512 (IJ1's Image::Type::HSB menu command is not working) created by
- Open clown. Run Image::Type::HSB Stack on it. Notice that data is changed. …
- 10:19 Ticket #495 (Tool cursors can get out of synch) closed by
- fixed
05/10/11:
- 17:33 Ticket #511 (Image window sometimes does not resize upon dimension change) created by
- Code to repack the image window is now in place. And if you run crop or …
- 17:08 Ticket #496 (Resize image panel at appropriate times) closed by
- fixed: mostly fixed the problem where the display window would not resize when …
- 15:21 Ticket #510 (Menu entry File::Revert does not work) closed by
- fixed: It turns out IJ1's revert was not working because the underlying plane …
- 15:08 Ticket #392 (Handle IJ1's in place manipulations of ImagePluses) closed by
- fixed: Fixed delete slice. Also fixed LegacyImageMap to correctly sync when …
- 15:05 Ticket #504 (Legacy layer gotchas) closed by
- fixed: improve the ability of IJ1 changes to be mirrored in IJ2 data structures …
- 09:54 Ticket #510 (Menu entry File::Revert does not work) created by
- The file revert menu command does not work. Create an IJ2 plugin to …
- 09:46 Ticket #25 (Improve Bio-Formats ITK plugin class structure and build system) closed by
- wontfix: As each of these pieces serves a necessary purpose, and the overall …
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