Timeline


and

05/27/11:

09:20 Ticket #498 (Speed up RGBImageTranslator?) closed by bdezonia
wontfix: After further thought I think it does not make sense to change this. At …
08:58 Ticket #547 (Make pure IJ2 Revert plugin) created by bdezonia
Due to limitations laid out in bug #531 and bug #528 we need a pure IJ2 …
08:40 Ticket #247 (Add Write functionality to the Bio-Formats ITK plug-in) closed by hinerm
fixed: The write method has been implemented for the Jace and Pipes BFITK plug-in …

05/26/11:

16:06 Ticket #378 (Fix buggy Number parameter widgets) closed by curtis
fixed: In 63fe2c383daa27575ee2fef46f7db10a901e4e9f the Swing number widget code …
15:39 Ticket #546 (Minimize time spent harmonizing Datasets/ImagePluses) created by bdezonia
Right now, in LegacyPlugin, prePluginHarmonization() code is run that …
14:21 Ticket #532 (Make legacy layer smarter about handling new IJ2 data types) closed by bdezonia
fixed: Fixed (revision unknown but shortly before …
14:18 Ticket #545 (Enhance Contrast doesn't) created by bdezonia
Running legacy plugin Process :: Enhance Contrast does not work unless you …
13:46 Ticket #544 (Exception thrown on Dataset::delete()) created by bdezonia
Open Blobs sample Image. Choose Image :: Rename. Now close image window. …

05/25/11:

13:49 Ticket #543 (Add check for final @Parameter field) closed by curtis
fixed: Fixed in cecdd1ae4071a7339a7085e369a95c37653b0fad, using resolved as …
10:11 Ticket #543 (Add check for final @Parameter field) created by gharris
If a @Parameter annotated field is final, an input widget is presented and …

05/24/11:

15:45 Ticket #542 (Change legacy layer so that it maintains Display<-->ImagePlus mappings) created by bdezonia
Unlike IJ1, IJ2 allows one to view the same set of data in two different …
13:19 Ticket #528 (Have LegacyImageMap track Dataset events) closed by bdezonia
fixed: closing and tracking in ticket #531
10:26 Ticket #533 (DisplayPostProcessor should not generate DatasetChangedEvents) closed by bdezonia
fixed: made sure dataset events getting triggered in all places they need to in …
09:49 Ticket #539 (For given file probe reports different pixels values between IJ1 & IJ2.) closed by bdezonia
fixed: fixed in 7cadcce428524a961cebf8761f93af945100b73c
09:21 Ticket #541 (Invert image in IJ2 not always same as IJ1 invert) closed by bdezonia
fixed

05/23/11:

16:41 Ticket #541 (Invert image in IJ2 not always same as IJ1 invert) created by bdezonia
In IJ1 inversion of an image is relative to 0/255. In IJ2, for generality, …
16:39 Ticket #540 (Convolution oriented plugins wrong in 8-bit case) created by bdezonia
IJ1 has special case code for convolve3x3() on a ByteProcessor. IJ2 code …
15:31 Ticket #539 (For given file probe reports different pixels values between IJ1 & IJ2.) created by bdezonia
The attached file displays differently in IJ1 & IJ2. At first I thought it …
15:01 Ticket #248 (Bio-Formats ITK plug-in - populate physical pixel sizes) reopened by hinerm
In the Jace implementation there is a NullPointerException at the first …
14:59 Ticket #538 (Improve legacy data support) created by bdezonia
The DatasetHarmonizer and the LegacyImageMap have evolved. They are …
14:44 Ticket #529 (IJ2 not setting current ImagePlus at correct time) closed by bdezonia
fixed: Fixed in 1a3c034a8d2f4436ab57f3e9b00aa9022cdc3ac1. …
14:42 Ticket #530 (Make legacy harmonization bidirectional) closed by bdezonia
fixed
14:42 Ticket #530 (Make legacy harmonization bidirectional) reopened by bdezonia
14:42 Ticket #530 (Make legacy harmonization bidirectional) closed by bdezonia
fixed: Initial implementation in 1a3c034a8d2f4436ab57f3e9b00aa9022cdc3ac1. Some …
11:52 Ticket #537 (Update ROIs correctly in DatasetHarmonizer) created by curtis
The legacy layer needs to translate ROIs back and forth between IJ1 and …
11:26 Ticket #172 (Improve jar2lib's CMake build file to assemble final resources post-build) closed by hinerm
fixed: Fixed with svn revision 7709 * updated cmake velocity template to …
11:21 Ticket #536 (Decide on ROI Persistence Mechanism) created by gharris
We need to decide on the persistence mechanism for ROIs. JHotDraw SVG …
10:56 Ticket #423 (Z Project can fail with an exception) closed by gharris
fixed

05/20/11:

23:00 Milestone biweekly-2011: May-09 to May-20 completed
Tasks from 2011-May-09 through 2011-May-20.
17:38 Ticket #481 (Refresh Display on DatasetChanged Event) closed by curtis
fixed: Both DatasetView and SwingDisplayWindow listen for DatasetUpdatedEvents …
17:16 Ticket #494 (Bugs displaying gradient images) closed by curtis
duplicate: Duplicate of #384.
17:06 Ticket #479 (Should Window, Key and Mouse Events extend DisplayEvent) closed by curtis
invalid: No comment in two weeks—closing ticket. If it comes up again we can …
17:04 Ticket #521 (Post JHotDraw incorporation none of the Tools work) closed by curtis
fixed: The tools are ostensibly working again. Zoom and probe still have some …
16:45 Ticket #534 (Image::Rename does not work) closed by bdezonia
fixed: Fixed in 9aafd7ecfc0a85f4bea25d6d37514304fc532c6f. Harmonization takes …
16:35 Ticket #379 (Add support for plugin previews) closed by curtis
fixed: Initial preview feature added in 37c47161459c98b3bdfbe77d1ae375668054e1e8. …
15:57 Ticket #535 (Add dirty bit tracking to Dataset) closed by bdezonia
fixed: Added in 40be2ad269d824182a2ef35b8ff8881dbadb25b4. Tracking in Dataset …
15:53 Ticket #535 (Add dirty bit tracking to Dataset) created by bdezonia
Create a dirty bit facility for Dataset. Update flag when data changes …
14:54 Ticket #534 (Image::Rename does not work) created by bdezonia
Open any sample. Choose Image :: Rename and enter a new name. The window …
14:47 Ticket #533 (DisplayPostProcessor should not generate DatasetChangedEvents) created by bdezonia
We bootstrapped the display architecture on the idea that the …
14:11 Ticket #532 (Make legacy layer smarter about handling new IJ2 data types) created by bdezonia
Freshly start IJ2. Create a gradient image that is 12-bit. Run the Image …
14:06 Ticket #531 (Legacy layer has limitations in regard to plugins that change data types) created by bdezonia
Open Bridge sample. Change type to 12-bit. Find Edges. File Revert. Data …
14:03 Ticket #530 (Make legacy harmonization bidirectional) created by bdezonia
From previous instantiations of IJ1 plugins there may be a remembered …
13:56 Ticket #529 (IJ2 not setting current ImagePlus at correct time) created by bdezonia
Open Bridge sample. Then create a Gradient image. Choose IJ1 plugin Rotate …
13:52 Ticket #528 (Have LegacyImageMap track Dataset events) created by bdezonia
The LegacyImageMap needs to track at least some of the Dataset events …
13:46 Ticket #527 (Exceptions thrown with 12-bit revert) closed by bdezonia
fixed: Closing this ticket and opening a series of related tickets
13:15 Ticket #377 (Support for color parameters) closed by curtis
fixed: Added in 4c2a819d5a11904148756c09a61c8379ef453b8d, and fully working as of …
10:08 Ticket #527 (Exceptions thrown with 12-bit revert) created by bdezonia
Open Bridge sample. Convert type to 12-bit. Do File::Revert. Multiple …
09:45 Ticket #519 (Image :: Type menu does unnecessary work) closed by bdezonia
fixed: fixed in 34584b1b27aff24a6183d31d87316862b1f552c1

05/19/11:

17:30 Ticket #526 (Handle loading of images that cannot come in at 1:1 scale) created by bdezonia
Since the adoption of JHotDraw the code that handled the loading and …
17:28 Ticket #518 (NullPtrExcep thrown when changing type of image) closed by bdezonia
fixed: Found that scale initialized to 0 in CanvasHelper. Now defaulting to 1 and …
15:43 Ticket #511 (Image window sometimes does not resize upon dimension change) closed by bdezonia
fixed: As of 4db5647609829d3e9bad8bee379a36ce582e1a00 (sometime after replacement …
13:50 Ticket #235 (Propagate change to ImageStack::getImageArray() throughout IJ) closed by bdezonia
fixed: Recently made the DatasetHarmonizer reset plane references in a Dataset …
13:10 Ticket #513 (Image::Type::HSB Stack plugin results display poorly) closed by bdezonia
fixed: Curtis found sliders not updating issue by …
13:05 Ticket #524 (DatasetView:setPosition() called more often than expected) closed by curtis
fixed: Fixed in 267a33831ffeddb55ce12b6d172325010c50e508.
13:01 Ticket #525 (Update LUTs correctly in DatasetHarmonizer) created by bdezonia
DatasetHarmonizer does nothing about bringing LUTs across from IJ1. So if …
12:37 Ticket #524 (DatasetView:setPosition() called more often than expected) created by bdezonia
When you scroll within a slider of a 3 or more dimensional image …
12:03 Ticket #523 (Improve Jar2Lib to proxy a set of core Java classes) closed by hinerm
fixed: This feature was implemented in revision 7707 through a "-core …

05/18/11:

12:10 Ticket #523 (Improve Jar2Lib to proxy a set of core Java classes) created by hinerm
Currently it's not entirely clear how Jace chooses which core Java classes …
10:46 Ticket #522 (Determine how to approach HSB support) created by bdezonia
IJ1 has some support for HSB images. You can take a RGB image, use …
10:09 Ticket #521 (Post JHotDraw incorporation none of the Tools work) created by bdezonia
The tools no longer work. You can select them but can't do anything with …
10:04 Ticket #520 (Running data changing plugins seems to have no effect) closed by bdezonia
fixed: Nobody was reacting to DatasetUpdatedEvents. Made DatasetView call …
10:03 Ticket #520 (Running data changing plugins seems to have no effect) created by bdezonia
Post JHotDraw support: Choose a Process menu entry like find edges. …

05/17/11:

12:47 Ticket #519 (Image :: Type menu does unnecessary work) created by bdezonia
If you choose an Image :: Type submenu item that matches your current type …
12:45 Ticket #517 (TypeChanger only supports planar Imgs) reopened by bdezonia
Actually this is the case as it is written for changeType(). Make …
12:41 Ticket #517 (TypeChanger only supports planar Imgs) closed by bdezonia
invalid: After investigation I see that TypeCHanger supports user specified …
12:26 Ticket #518 (NullPtrExcep thrown when changing type of image) created by bdezonia
If you change the type of an image via Image :: Type submenu the image …
11:48 Ticket #517 (TypeChanger only supports planar Imgs) created by bdezonia
Looking at TypeChanger it is apparent that it creates a new Img of planar …
09:09 Ticket #516 (Add arbitrary properties to Metadata) created by gharris
Wondering if we want to add something like properties to the ImgPlus …

05/12/11:

16:24 Ticket #515 (Performance improve OPS) created by bdezonia
IJ2 relies on the performance of OPS' AssignOperation. That class works on …
12:26 Ticket #500 (Rename RegionCursor) closed by bdezonia
fixed

05/11/11:

15:24 Ticket #514 (Increase the quality of IJ2's color display results) created by bdezonia
IJ2's display of color data needs improvement. The easiest way to see this …
15:21 Ticket #513 (Image::Type::HSB Stack plugin results display poorly) created by bdezonia
If you load clown and run the Image::Type:HSB Stack plugin the results are …
15:14 Ticket #512 (IJ1's Image::Type::HSB menu command is not working) closed by bdezonia
fixed: fixed issue in LegacyImageMap. returned data looks correct though IJ2's …
14:47 Ticket #512 (IJ1's Image::Type::HSB menu command is not working) created by bdezonia
Open clown. Run Image::Type::HSB Stack on it. Notice that data is changed. …
10:19 Ticket #495 (Tool cursors can get out of synch) closed by bdezonia
fixed

05/10/11:

17:33 Ticket #511 (Image window sometimes does not resize upon dimension change) created by bdezonia
Code to repack the image window is now in place. And if you run crop or …
17:08 Ticket #496 (Resize image panel at appropriate times) closed by bdezonia
fixed: mostly fixed the problem where the display window would not resize when …
15:21 Ticket #510 (Menu entry File::Revert does not work) closed by bdezonia
fixed: It turns out IJ1's revert was not working because the underlying plane …
15:08 Ticket #392 (Handle IJ1's in place manipulations of ImagePluses) closed by bdezonia
fixed: Fixed delete slice. Also fixed LegacyImageMap to correctly sync when …
15:05 Ticket #504 (Legacy layer gotchas) closed by bdezonia
fixed: improve the ability of IJ1 changes to be mirrored in IJ2 data structures …
09:54 Ticket #510 (Menu entry File::Revert does not work) created by bdezonia
The file revert menu command does not work. Create an IJ2 plugin to …
09:46 Ticket #25 (Improve Bio-Formats ITK plugin class structure and build system) closed by hinerm
wontfix: As each of these pieces serves a necessary purpose, and the overall …

05/09/11:

16:57 Ticket #509 (Determine how to approach legacy Image::Type menu plugins) created by bdezonia
The RGB Stack and HSB Stack plugins seem to work when fed 3 channel color …
16:48 Ticket #508 (Preserve IJ1 metadata) created by bdezonia
In IJ1 an ImageStack can have a label for each slice. IJ2 does not …
16:25 Ticket #507 (opening Clown image results in out of memory in heap) closed by bdezonia
fixed: Fixed bug in RgbImageTranslator that caused infinite recursive loop inside …
15:57 Ticket #507 (opening Clown image results in out of memory in heap) created by bdezonia
Can no longer open the clown image without a runtime exception (out of …
14:47 Ticket #506 (Fix fill plugin when color selection code in place) created by bdezonia
Currently the Fill plugin prompts the user for a value to fill the Dataset …
14:46 Ticket #505 (Fix Crop plugin when region selection code in place) created by bdezonia
The Crop plugin currently asks for the extents of the region to crop. When …
13:36 Ticket #499 (Image math tries to run even if given no input Datasets) closed by bdezonia
fixed

05/06/11:

23:00 Milestone biweekly-2011: Apr-25 to May-06 completed
Tasks from 2011-Apr-25 through 2011-May-06.
17:24 Ticket #504 (Legacy layer gotchas) created by bdezonia
If an IJ1 plugin modifies the ImageStack of an ImagePlus that is …
17:16 Ticket #472 (Test and improve legacy layer) closed by bdezonia
fixed: unit tests done. ticket complete.
16:58 Ticket #482 (Delete Dataset on final Display Closed) closed by curtis
duplicate: Duplicate of #413, already fixed. When a view goes away, …
12:28 Ticket #503 (Improve Bio-Formats Hudson builds) created by curtis
Currently, there are several different Bio-Formats Hudson jobs on both the …
11:54 Ticket #472 (Test and improve legacy layer) reopened by bdezonia
11:20 Ticket #472 (Test and improve legacy layer) closed by bdezonia
fixed: 2) pretty sure I understand what needed to be done here. completed Ticket …

05/05/11:

14:26 Ticket #248 (Bio-Formats ITK plug-in - populate physical pixel sizes) closed by hinerm
fixed: Discovered that calls to getPixelPhysicalSizeX/Y/Z/TimeIncrement could …
11:49 Ticket #246 (Farsight doesn't handle non-8bit unsigned pixel type images) closed by hinerm
wontfix: Moved this issue to the Farsight Mantis tracker: …

05/04/11:

16:39 Ticket #502 (Expand Image Calculator plugin) created by bdezonia
Extending the Image Calculator to have more operations is quite simple. …
16:06 Ticket #501 (Make rendering quality a preference) created by bdezonia
Currently SwingImageCanvas renders using nearest neighbor interpolation. …
15:52 Ticket #500 (Rename RegionCursor) created by bdezonia
The OPS class RegionCursor does not conform to the Cursor interface. …
15:48 Ticket #499 (Image math tries to run even if given no input Datasets) created by bdezonia
Run the Image Calculator plugin before you have opened any images in IJ2. …
11:35 Ticket #498 (Speed up RGBImageTranslator?) created by bdezonia
RGBImageTranslator is very general in making ImagePluses from Datasets. It …
11:20 Ticket #497 (Rotate 90 degrees: choose pan/zoom behavior) created by bdezonia
If panned and zoomed on an image and then you invoke a rotate 90 degrees …
11:15 Ticket #496 (Resize image panel at appropriate times) created by bdezonia
Currently there a re a couple places where the panel is not getting …
11:06 Ticket #419 (The XY flipping plugins do not seem to work) closed by bdezonia
fixed: Curtis changed the UI so that the resize on rotate logic is different. I …
10:31 Ticket #477 (Image Calculator too picky on the shape of input images) closed by bdezonia
fixed
10:16 Ticket #495 (Tool cursors can get out of synch) created by bdezonia
Make a gradient image. Choose probe tool and cursor goes to cross. Make …
10:08 Ticket #494 (Bugs displaying gradient images) created by bdezonia
Gradient images do not always display correctly: - 1-bit gradient images …

05/03/11:

16:25 Ticket #493 (Test legacy plugins) created by bdezonia
Test legacy plugins for compatibility with IJ2. As needed create tickets …
14:35 Ticket #492 (Improve OPS) closed by bdezonia
fixed
14:34 Ticket #492 (Improve OPS) created by bdezonia
Improve OPS: - performance of RegionCursor improved significantly - …
14:26 Ticket #491 (Review JHotDraw integration in OME Shoola) created by gharris
14:25 Ticket #490 (Image Properties Editor) created by gharris
- We need a plugin to replace IJ1's "Image > Properties" command. This …
14:22 Ticket #489 (Add/Delete "Slice" in ImageJ2) created by gharris
Decide what a "slice" is and how to designate how to apply an add or …
12:17 Ticket #488 (Launcher - Memory Limit) created by gharris
Make launcher respect memory limit as set by plugin (See #486)
12:01 Ticket #487 (Launcher - Splash Screen) created by gharris
Pass splash screen call to JVM when invoking
10:53 Ticket #486 (Memory Limits Changer) created by gharris
Add API and plugin for changing memory limit
10:51 Ticket #485 (Apply Plugin Operation to Stack) created by gharris
- Add an option to the input dialog to apply operation to stack - Decide …
10:47 Ticket #484 (Print Image Functionality) created by gharris
Add functionality to print an image.
10:39 Ticket #483 (File/New Action) created by gharris
Action/plugin to create a new file (Dataset)
09:37 Ticket #482 (Delete Dataset on final Display Closed) created by gharris
Call Dataset.delete() when associated displays are all closed (reference …
09:35 Ticket #481 (Refresh Display on DatasetChanged Event) created by gharris
Rework displays to listen to dataset events and refresh when dataset …
09:32 Ticket #480 (Add Tool Configuration Annotation) created by gharris
Add Tool Configuration Annotation: * Allow @Parameter annotations in …

05/02/11:

18:38 Ticket #479 (Should Window, Key and Mouse Events extend DisplayEvent) created by gharris
If WinEvent extends DisplayEvent this implies that all windows are …
12:32 Ticket #478 (Update Imglib performance benchmarks) created by bdezonia
Update the Imglib performance benchmark tests for Imglib2. Although they …

05/01/11:

22:02 Milestone imagej-2.0-alpha2 completed
Second alpha release demonstrating the new class hierarchy, plugin …
22:00 Ticket #464 (Fix crop) closed by curtis
fixed: Fixed in c2d21593810a35e263a65854e5e040bbbb98384d, for the most part.

04/29/11:

15:06 Ticket #435 (Mouse click events counted twice) closed by bdezonia
worksforme: cannot remember how this could be replicated. tested AWTEventDispatcher …
14:43 Ticket #477 (Image Calculator too picky on the shape of input images) created by bdezonia
You cannot take the 512x512 Bridge image and a 512x512 Gradient image and …
14:23 Ticket #476 (ZoomTool: zoom to dragged rectangle slightly panned) created by bdezonia
Activate the zoom tool. Drag a rectangle (that you can't see) around a …
14:17 Ticket #475 (Color images show channel slider unneccessarily) closed by curtis
wontfix: We need the channel slider, for position localization. If you draw a ROI, …
14:13 Ticket #475 (Color images show channel slider unneccessarily) created by bdezonia
Now that color support is in place old channel sliders are left around. …
14:09 Ticket #474 (Image Calculator intialization throws exception) created by bdezonia
Load an image. Then open Image Calculator. If running from eclipse you can …
11:47 Ticket #473 (Image Calculator throws exception) closed by bdezonia
fixed: fixed in OPS. RegionCursor.next() was setting the underlying RandomAccess' …
11:39 Ticket #473 (Image Calculator throws exception) created by bdezonia
Open bridge image. Use Process :: Image Calculator to try and make an …
11:34 Ticket #413 (Delete Datasets when appropriate) closed by curtis
fixed: Fixed in eb18346d14c1525f13e7dd358d45e4af9418e6be.
11:30 Ticket #472 (Test and improve legacy layer) created by bdezonia
If image translation can be handled by an up conversion (12-bit to 16-bit …
11:23 Ticket #471 (Big multidimensional images can display with sliders off the screen) created by bdezonia
Grant reported that big images that get scaled to fit on screen can have …
11:19 Ticket #437 (Zoom hotkeys should match IJ1) closed by bdezonia
fixed: I believe this has been addressed.
11:15 Ticket #470 (Make a ResetDisplay plugin) created by bdezonia
Make a plugin that does the following to a display window - setZoom(0) [ …
10:43 Ticket #424 (T1 Head slider confusingly named) closed by curtis
fixed
10:41 Ticket #469 (Channel colors and sliders interact strangely) closed by curtis
fixed: Fixed in 8745867e16f606aed5023270eef0330ebeaed795.
10:41 Ticket #468 (Incrementing sliders can cause runtime exceptions) closed by curtis
fixed: Fixed in 8745867e16f606aed5023270eef0330ebeaed795.
10:39 Ticket #403 (Utilize the active Dataset in plugins) closed by curtis
fixed: Added an ActiveDatasetPreprocessor in …
08:58 Ticket #443 (Zoom plugin hotkeys are not working) closed by bdezonia
fixed: confirmed it is working
08:51 Ticket #443 (Zoom plugin hotkeys are not working) reopened by bdezonia
updated to 9f70aa33989365e569bd116bb2732cd19751721c and cannot confirm its …
00:53 Ticket #443 (Zoom plugin hotkeys are not working) closed by curtis
fixed: Fixed in 9f70aa33989365e569bd116bb2732cd19751721c.
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