Timeline


and

03/08/11:

11:20 Ticket #346 (ITool) closed by curtis
fixed: The ij-tool and ij-core-tools projects exist, and PanTool is ostensibly …

02/25/11:

23:00 Milestone biweekly-2011: Feb-14 to Feb-25 completed
Tasks from 2011-Feb-14 through 2011-Feb-25.
12:17 Ticket #342 (Catch up on email) closed by curtis
fixed: All urgent emails tackled. Still some less urgent ones left.
10:55 Ticket #29 (Integrate Java OO layer over SLIM-curve C functions) closed by aivar
fixed: The SLIM Plugin now has an interface for curve fitting routines.
10:53 Ticket #28 (Reimplement problematic NR SLIM-curve routines) closed by aivar
fixed
10:46 Ticket #18 (Verify spectral-lifetime data can be modeled) closed by aivar
fixed: SLIM Plugin is processing spectral-lifetime data with ImgLib and …

02/24/11:

15:04 Ticket #348 (Setup home laptop for devleopment) closed by bdezonia
fixed
15:04 Ticket #348 (Setup home laptop for devleopment) created by bdezonia
Setup Linux and all dev tools for development on home laptop
14:53 Ticket #347 (Port IJ1 plugins to IJ2) created by bdezonia
Start moving plugin implementations from IJ1 to IJ2. Start with 10 or 20 …
14:25 Ticket #304 (Improve Long support in ImageJ 2.x) closed by bdezonia
wontfix: At the hackathon it was decided that full long support would not be …

02/23/11:

14:26 Ticket #56 (Get JSR-223 working with Java 5) closed by curtis
wontfix: Now that OpenJDK development is underway for Mac OS X, we can target Java …
14:23 Ticket #4 (Write tests for external dependent projects) closed by curtis
wontfix: Unfortunately, for time reasons, writing unit tests for external code …
14:22 Ticket #16 (Adapt ImageProcessor subclasses to use imglib) closed by curtis
wontfix: After a discussion with Wayne Rasband, we have decided not to expose …
14:20 Ticket #47 (Explore deployment/integration via Java Advanced Imaging) closed by curtis
wontfix: We now have a pretty solid workflow/plugin extensibility framework, which …
13:53 Ticket #123 (Announce CellProfiler / ImageJ interoperability) closed by curtis
fixed: Lee's paper on CellProfiler 2.0, which highlights the ImageJ …
13:52 Ticket #160 (Maven: find a way to create distribution bundles) closed by curtis
fixed: We now have a simple cross-platform binary distribution of ImageJ using …

02/22/11:

17:41 Ticket #154 (Fix problems with jar2lib wrapping ij.jar) closed by curtis
wontfix: From my tests so far, wrapping the ImageJDev component libraries works (I …
17:40 Ticket #170 (Create new bf-cpp project based on jar2lib) closed by curtis
fixed: It is now possible to wrap and build the Bio-Formats C++ bindings on the …
10:23 Ticket #293 (Brainstorm list of possible areas of synergy between CP, CPA and OMERO) closed by afraser
fixed
10:22 Ticket #292 (Investigate Omero Tables) closed by afraser
fixed: from  http://trac.openmicroscopy.org.uk/ome/wiki/OmeroTables#Going-forward: …
08:13 Ticket #173 (Convert jar2lib into a Maven plugin) closed by curtis
fixed: This work is done in  loci-software:r7622 through  loci-software:r7629.

02/21/11:

12:58 Ticket #339 (Reconcile ImageJ plugin framework and workflow engine) closed by curtis
fixed: Initial reconciliation committed as …

02/16/11:

16:56 Ticket #346 (ITool) created by rlentz
The parameterized plugin / annotation API has several IPlugin …
16:49 Ticket #345 (Priority for OpenCL plugins from Kitware/ITK team) created by rlentz
We have a planned coordination between the Fiji, ImageJdev, and ITK teams …
14:17 Ticket #48 (ImageJ Ice server) closed by curtis
wontfix: Rather than use Ice, Rick Lentz has explored use of Hessian binary web …
13:39 Ticket #80 (Action/Command Architecture Explorations) closed by curtis
fixed: Technically, neither of the terms "action" nor "command" carry over …
13:34 Ticket #10 (Maintain strict separation of concerns (i.e., UI independence)) closed by curtis
fixed: Our current approach is to use SezPoz for dependency injection, with a …
13:26 Ticket #325 (IJ1 Plugins Installer for Envisaje) closed by curtis
fixed: This is working (see the Envisaje …
13:24 Ticket #288 (Declarative registration of plugins (usingSezPoz)) closed by curtis
fixed: This is working in both Envisaje and the simple Swing ImageJ2.0 GUI.
13:24 Ticket #327 (Image Opener) closed by curtis
fixed: The …
13:20 Ticket #15 (Design add-ons mechanism) closed by curtis
fixed: In the simplest context, an "add-on" is simply a JAR file containing …
13:16 Ticket #328 (Commit Envisaje to SVN repository) closed by curtis
fixed: An initial version of Envisaje was committed on 2011-Jan-20. The Envisaje …
13:14 Ticket #30 (Investigate dependency injection and other technologies for modular code ...) closed by curtis
fixed: We are using  SezPoz for dependency injection, …
13:08 Ticket #17 (Support for N-dimensional image data) closed by curtis
fixed: ImgLib is N-dimensional. The updated ImgLib2 design will incorporate …
13:07 Ticket #7 (Evaluate imglib for core ImageJ work) closed by curtis
fixed: At the Madison hackathon, ImgLib underwent a major design iteration …
13:00 Ticket #11 (Improve plugins infrastructure) closed by curtis
fixed: The ij-plugin project now has a fleshed-out annotated plugins design, …

02/15/11:

16:21 Ticket #344 (Create OME-XML to 2D Stitcher conversion utility for Fiji) created by curtis
Johannes Schindelin and I discussed a conversion tool for reading OME-XML …
16:19 Ticket #343 (Create graphical WiscScan OME-XML repair tool) created by curtis
Eric Alexander adapted CommentSurgery to fix malformed OME-TIFF files from …
12:58 Ticket #342 (Catch up on email) created by curtis
The hackathon left me woefully behind on email.
11:21 Ticket #341 (Fix/enhance Imglib 2.0 for use by ImageJ 2) created by bdezonia
Imglib2 will be pulled into the core of IJ2. It needs some work for that …
10:57 Ticket #121 (CellProfiler 2.0 paper highlighting ImageJ interoperability) closed by leek
fixed
10:55 Ticket #340 (Migrate IJ2 Dataset to use Imglib's Img interface) created by bdezonia
The Dataset code currently in IJ2 needs to be retired. Move code toward …
10:47 Ticket #322 (Improve mutability of Datasets) closed by bdezonia
wontfix
10:46 Ticket #339 (Reconcile ImageJ plugin framework and workflow engine) created by curtis
Aivar wrote a nice workflow engine with some general module interfaces, …
10:44 Ticket #322 (Improve mutability of Datasets) reopened by bdezonia
10:43 Ticket #305 (Eliminate all classes in ij1-patches) closed by bdezonia
wontfix: Wayne will not be incoporating our changes into 1.x. We will shrink …
10:41 Ticket #322 (Improve mutability of Datasets) closed by bdezonia
fixed: The Dataset code is being retired. This ticket can go away.
10:40 Ticket #273 (Investigate feasability of general iterators in imagej package) closed by bdezonia
fixed: The ideas for this code have been implemented in imglib-ops at this point. …
10:39 Ticket #161 (Maven: better Eclipse project metadata) closed by curtis
wontfix: It would be nice to eventually distribute some shared Eclipse …
10:38 Ticket #323 (Port ImglibProcessor functional interface) closed by bdezonia
fixed: During the hackathon the functional interface was pulled into imglib as …
10:23 Ticket #151 (Investigate ways to improve LOCI Java services functionality) closed by curtis
wontfix: Unfortunately, I do not have time to improve Bio-Formats's services …
10:17 Ticket #200 (Clean up autogen package) closed by curtis
wontfix: Josh Moore has volunteered to take over maintenance of the Bio-Formats …
10:15 Ticket #300 (Upload bf-cpp and bf-itk binary builds) closed by curtis
fixed: Mark has done this.
10:13 Ticket #159 (Maven: eliminate scan-deps.pl script) closed by curtis
fixed: The dependency:analyze target is sufficient. However, the OME team has …
09:38 Ticket #157 (Maven: migrate Bio-Formats command line tools) closed by curtis
wontfix: The OME team has opted to not use Maven for Bio-Formats, so this task is …
09:37 Ticket #156 (Maven: create assemblies for loci_tools.jar and ome_tools.jar) closed by curtis
fixed: This is done in the Bio-Formats maven branch. However, the OME team has …
09:37 Ticket #155 (Maven: get TestNG-based unit tests working) closed by curtis
wontfix: The OME team has opted to not use Maven for Bio-Formats, so this task is …
09:36 Ticket #296 (Configure Hudson to email committers who broke the build) closed by curtis
fixed: To email the committer who broke the build, I believe that person must …
09:35 Ticket #201 (Merge maven branch to trunk) closed by curtis
fixed: Bio-Formats was migrated out of the LOCI Software SVN repository. For the …
09:34 Ticket #158 (Maven: resolve filtering issues) closed by curtis
wontfix: The OME team has opted to not use Maven for Bio-Formats, so this task is …
09:33 Ticket #40 (Support for non-rectilinear coordinate systems) closed by curtis
fixed: The ImgLib2 design can accommodate functional transforms between …
09:30 Ticket #6 (Flesh out ImageJ 2.0 class hierarchy) closed by curtis
fixed: The design has come a long way, with many of the issues above sorted. The …

02/14/11:

18:40 Ticket #338 (Work with Curtis on Plugin/Module IJ2 interfaces) created by aivar
Create an intermediate interface for IJ2 modules that provides lists of …
18:22 Ticket #302 (Investigate plugin chaining schemes) closed by aivar
fixed: The MULTIINSTANCE version of the workflow became a new project: …
13:48 Ticket #314 (Back the WorkFlowPipes plugin with Aivar's workflow Code) closed by rlentz
fixed: See the backed source code for the latest version at: …

02/12/11:

00:00 Milestone progress-report completed
Milestone for project progress report.

02/11/11:

23:00 Milestone biweekly-2011: Jan-31 to Feb-11 completed
Tasks from 2011-Jan-31 through 2011-Feb-11.
16:46 Ticket #337 (Find ImageJ bug that causes BioFormats ImporterTest to fail) created by bdezonia
At the hackathon Curtis found that BF's ImporterTest was failing for …
15:43 Ticket #336 (Continue work on revision 3 of imglib-ops) created by bdezonia
Rev 2 of AssignOperation code is in the imglib-ops subproject of Imglib. …
15:28 Ticket #335 (Hackathon work) closed by bdezonia
fixed
15:25 Ticket #335 (Hackathon work) created by bdezonia
Presentation on Dataset interface Presentation on AssignOperation Learning …

02/10/11:

12:20 Ticket #294 (Email OME developers with thoughts, and request for feedback) closed by afraser
fixed
12:20 Ticket #291 (Query data via the OMERO Python API) closed by afraser
fixed
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