Timeline


and

10/08/10:

18:11 Ticket #183 (Get LOCI servers behind firewall) closed by bdezonia
fixed
11:33 Ticket #26 (Improve Bio-Formats ITK plugin implementation) closed by hinerm
duplicate: Split this ticket into several other tickets: #245 #247 #248 #249
11:32 Ticket #249 (Test Bio-Formats ITK plug-in extensively on Windows) created by hinerm
Current development on the BFITK plug-in is primarily in Mac OSX. Testing …
11:30 Ticket #248 (Bio-Formats ITK plug-in - populate physical pixel sizes) created by hinerm
Currently this is not done due to invalid memory access errors on some …
11:28 Ticket #247 (Add Write functionality to the Bio-Formats ITK plug-in) created by hinerm
Currently Farsight modules can only use BFITK to read image data, and …
11:24 Ticket #246 (Farsight doesn't handle non-8bit unsigned pixel type images) created by hinerm
When non-8bit unsigned pixel type images are opened in Farsight, only a …
11:00 Ticket #245 (Improve Bio-Formats ITK plug-in handling of multichannel images) created by hinerm
As of  loci-software:r7050, code was added to the BFITK plug-in to change …
10:44 Ticket #244 (BFITK Plug-In should be accessible regardless of where the calling program ...) closed by hinerm
fixed: Resolved in revision 7050. As ITK plug-ins require an ITK_AUTOLOAD_PATH …
10:40 Ticket #244 (BFITK Plug-In should be accessible regardless of where the calling program ...) created by hinerm
Currently, for a Farsight module to use the BFITK plug-in, the module has …
10:27 Ticket #243 (Add Bio-Formats-Supported Files to Open dialog) created by hinerm
To increase the visibility of Bio-Formats functionality as a plug-in for …

10/07/10:

14:22 Ticket #242 (ImgLibProcessor - improved functionality) closed by bdezonia
fixed
14:22 Ticket #242 (ImgLibProcessor - improved functionality) created by bdezonia
Improve support for LongType data in ImgLibProcessor and related classes. …
14:18 Ticket #234 (Fix adjust brightness/contrast to work with imglib backed data) closed by bdezonia
fixed: done
14:17 Ticket #233 (Fix display of ramped data in ImageJ after New Image) closed by bdezonia
fixed

10/06/10:

15:56 Ticket #241 (Write up results of industry-standard plugin framework document) created by rlentz
Cover features of Maya and Photoshop APIs to conclude standard based …
15:49 Ticket #240 (Develop standards documents for coding practices based on Java) created by rlentz
Draft version of a proposal of best development practices per IJdev.org …
15:47 Ticket #239 (Interative deconvolution as an example plugin for calling OpenCL from ...) created by rlentz
tbd..

10/04/10:

15:19 Ticket #23 (CellProfiler analysis pipeline plugin for ImageJ) closed by leek
fixed
11:59 Ticket #238 (Prepare presentation for ImageJConf) created by curtis
We need to prepare a presentation for the ImageJ conference. Outline …
11:32 Ticket #207 (Integrate Annotation Based Plugin Scheme into core ImageJ) closed by rlentz
wontfix: During the bi-weekly status meeting Curtis decided to no focus on …
11:23 Ticket #237 (6th - 7th November 2008: ImageJ User and Developer Conference, Luxembourg ...) created by rlentz
ImageJdev time block 4:30 - 6:00 Contribute summary and deconvolution …
10:45 Ticket #236 (Web Service Demos..) created by rlentz
Several methods exists for integrating software services on multiple …
09:20 Ticket #235 (Propagate change to ImageStack::getImageArray() throughout IJ) created by bdezonia
ImageStack::getImageArray() used to return a reference to its internals …
09:15 Ticket #187 (Demo of Injectable Singleton using Lookup for Saving Preferences) closed by gharris
fixed

10/01/10:

23:00 Milestone biweekly-2010: Sep-20 to Oct-01 completed
Tasks from 2010-Sep-20 through 2010-Oct-01.
17:27 Ticket #234 (Fix adjust brightness/contrast to work with imglib backed data) created by bdezonia
when you run adjust brightness/contrast on imglib backed data it generates …
17:25 Ticket #233 (Fix display of ramped data in ImageJ after New Image) created by bdezonia
Using File New Image and choosing fill with ramp ImageJ displays unusual …
17:22 Ticket #232 (Fix ImageJ bugs apparent with imglib backed images created with File New ...) created by bdezonia
After some initial testing of imglib support in ImageJ I have found a …
17:13 Ticket #222 (ImageJ - integrate imglib images into NewImage) closed by bdezonia
fixed: now working. other bugs apparent. will open other tickets
17:13 Ticket #206 (Incorporate ImgLib images into ImageStack) closed by bdezonia
fixed: done
16:50 Ticket #142 (Add loci-plugins.jar to bf-cpp) closed by curtis
fixed: As stated above, loci_plugins.jar is now included, so I'm closing this …
16:49 Ticket #140 (Update cron scripts) closed by curtis
fixed: Everything listed above is done except for backup-omero, because: A) there …
11:22 Ticket #231 (Create an outline for the GUI section of the imagejdev.org page) created by rlentz
The GUI section is currently TBD. As part of the division of labor for …

09/29/10:

15:53 Ticket #230 (ImageJ - harmonize indexing/plane/position code) closed by bdezonia
fixed
15:52 Ticket #230 (ImageJ - harmonize indexing/plane/position code) created by bdezonia
curtis and I have some duplicated code. refactor to use les code.
15:51 Ticket #229 (ImgLibProcessor - improve design of fill(mask)) closed by bdezonia
fixed
15:51 Ticket #229 (ImgLibProcessor - improve design of fill(mask)) created by bdezonia
make fill(mask) utilize selectors and functions for code reuse rather than …
15:49 Ticket #228 (ImgLibProcessor - make min/max calcs mirror IJ for all methods) closed by bdezonia
fixed
15:48 Ticket #228 (ImgLibProcessor - make min/max calcs mirror IJ for all methods) created by bdezonia
Curtis changes to imglib to allow planar access to data needs to be …
15:46 Ticket #227 (Incorporate planar access container code into ImageJ) created by bdezonia
Curtis changes to imglib to allow planar access to data needs to be …
15:27 Ticket #226 (Review Josh's Bio-Formats testing) created by curtis
One of our students did some testing of Bio-Formats's handling of various …
11:29 Ticket #225 (Update the http://www.imagejdev.org/opencl landing page to reflect ...) created by rlentz
Inputs regarding the feedback of the publication landingpage will be used …
11:27 Ticket #224 (Move the publication source to a maven project) created by rlentz
Maven allows recognition of os platforms and can use the respective native …
11:21 Ticket #223 (MAVEN Familiarization) closed by rlentz
fixed
11:20 Ticket #217 (OpenCL Publication) closed by rlentz
fixed: The OpenCL Publication has been updated to reflect the first eight …

09/28/10:

14:03 Ticket #223 (MAVEN Familiarization) created by rlentz
Understanding Maven provides key knowledge useful for employing …

09/24/10:

17:28 Ticket #184 (Migrate imglib to Maven) closed by curtis
fixed: Imglib has been split into several modules; see …
16:12 Ticket #222 (ImageJ - integrate imglib images into NewImage) created by bdezonia
change NewImage to create new images with imglib types.
16:10 Ticket #221 (ImageJ - add SelectionFunctions to iterators) closed by bdezonia
fixed
16:10 Ticket #221 (ImageJ - add SelectionFunctions to iterators) created by bdezonia
create the ability for users to select subsets of data to iterate over
16:09 Ticket #220 (Check 64-bit Linux servers for backdoors) closed by bdezonia
fixed
16:08 Ticket #220 (Check 64-bit Linux servers for backdoors) created by bdezonia
slashdot published info on a very common exploit that affects 64-bit Linux …
16:05 Ticket #219 (ImageJ - add Observers to various RoiOperations) closed by bdezonia
fixed
16:05 Ticket #219 (ImageJ - add Observers to various RoiOperations) created by bdezonia
16:03 Ticket #218 (ImgLibProcessor - implement functional class support) closed by bdezonia
fixed
16:03 Ticket #218 (ImgLibProcessor - implement functional class support) created by bdezonia
Make ImgLibProcessor related classes workj with Unary and Binary …
15:57 Ticket #206 (Incorporate ImgLib images into ImageStack) reopened by bdezonia
15:57 Ticket #206 (Incorporate ImgLib images into ImageStack) closed by bdezonia
fixed

09/23/10:

16:20 Ticket #217 (OpenCL Publication) created by rlentz
Kevin and Curtis provided feedback regarding the draft publication …
13:09 Ticket #124 (Find a cure for AWT - WX woes on MacOS) closed by afraser
fixed

09/20/10:

14:34 Ticket #216 (New ImgLib container types for use with imglib-io) created by curtis
The bf-imglib adapter currently uses an ArrayContainerFactory to generate …
13:05 Ticket #215 (Integrate bf-imglib with ij.io package) created by curtis
The bf-imglib package creates imglib Image objects using Bio-Formats. We …
10:49 Ticket #214 (EventBus using Lookup API Demo) created by gharris
Demo of using Lookup for EventBus StatusLine in StatusBar Other possible …
10:40 Ticket #213 (Abstract Plugin Input/Output Maps and Execution) created by gharris
Need use cases and testing.
10:37 Ticket #208 (Persisting Parameter Values in AbstractPlugins) closed by gharris
fixed
10:35 Ticket #185 (Source code commits to SVN) closed by gharris
fixed
10:11 Ticket #212 (ImgLibProcessor - change how BinaryFunctions are defined and used) closed by bdezonia
fixed
10:11 Ticket #212 (ImgLibProcessor - change how BinaryFunctions are defined and used) created by bdezonia
10:11 Ticket #211 (get home system setup for imagej work) closed by bdezonia
fixed
10:10 Ticket #211 (get home system setup for imagej work) created by bdezonia
10:09 Ticket #210 (Fix imagej Operations that relied on iteration order) closed by bdezonia
fixed
10:09 Ticket #210 (Fix imagej Operations that relied on iteration order) created by bdezonia
Some operations made assumptions of the order of imglib's iteration. …
10:08 Ticket #209 (Reorganize package structure for ImgLibProcessor and related classes) closed by bdezonia
fixed
10:07 Ticket #209 (Reorganize package structure for ImgLibProcessor and related classes) created by bdezonia

09/19/10:

22:56 Ticket #208 (Persisting Parameter Values in AbstractPlugins) created by gharris
Added an attribute to Parameter, String persist() default "". If a field …

09/17/10:

23:00 Milestone biweekly-2010: Sep-07 to Sep-17 completed
Tasks from 2010-Sep-07 through 2010-Sep-17.
17:48 Ticket #176 (Migrate SLIM-curve from Assembla to LOCI server) closed by curtis
fixed: SLIM-curve project now exists at …
16:59 Ticket #24 (Generalize Bio-Formats C++ bindings into JAR-to-native-library generator) closed by curtis
fixed: Done. See ticket #153 for details. Also see ticket #154 for outstanding …
16:44 Ticket #179 (Create CMake build file for SLIM-curve) closed by curtis
wontfix: There actually is a CMake build file already, but it is pretty pointless …
16:06 Ticket #174 (Update imagejdev.org web site) closed by curtis
fixed: I have updated various portions of the site and reorganized the menus to …
16:05 Ticket #167 (Fix up Image5D project) closed by curtis
fixed: Done. See  loci-java:#514 for details.
15:19 Ticket #180 (OMERO Workflow Project tasks) closed by curtis
fixed: Eric and Andy are responsible for the next steps of the OMERO workflow …
14:35 Ticket #163 (Maven: write developer documentation on Maven best practices) closed by curtis
fixed: For now, I have updated the [ http://imagejdev.org/dev instructions on …

09/15/10:

13:38 Ticket #207 (Integrate Annotation Based Plugin Scheme into core ImageJ) created by rlentz
A novel application of Java annotations has been developed as an …
13:25 Ticket #191 (OpenCL Publication) closed by rlentz
fixed: Draft publication submitted for internal review on 14 Sept, 2010. OpenCL …
10:27 Ticket #206 (Incorporate ImgLib images into ImageStack) created by bdezonia
The logical place to start the imglib integration is in ImageStack. …
10:22 Ticket #205 (ImageJ - Fix broken tests on Windows) closed by bdezonia
fixed
10:22 Ticket #205 (ImageJ - Fix broken tests on Windows) created by bdezonia
A few of the ImageJ tests fail on Windows development environments. So …

09/13/10:

11:40 Ticket #204 (ImgLibProcessor - refactor fill(mask)) closed by bdezonia
fixed
11:39 Ticket #204 (ImgLibProcessor - refactor fill(mask)) created by bdezonia
11:39 Ticket #203 (ImgLibProcessor - refactor and fix noise()) closed by bdezonia
fixed
11:39 Ticket #203 (ImgLibProcessor - refactor and fix noise()) created by bdezonia

09/10/10:

18:08 Ticket #202 (Update devleopment tools) closed by bdezonia
fixed
18:08 Ticket #202 (Update devleopment tools) created by bdezonia
With upgrade of Hudson build tool to Maven get all my projects updated and …
17:04 Ticket #96 (Migrate LOCI repositories to Maven) closed by curtis
fixed: Maven version of autogen package added in  loci-java:r6914. However, the …
17:03 Ticket #201 (Merge maven branch to trunk) created by curtis
The  loci-java:source:branches/maven branch needs to be merged to …
16:58 Ticket #200 (Clean up autogen package) created by curtis
The LOCI autogen package is out of date, with obsolete code of various …

09/09/10:

15:50 Ticket #199 (ImageJ - define and integrate ProgressTracker class in imagej.process ...) closed by bdezonia
fixed
15:50 Ticket #199 (ImageJ - define and integrate ProgressTracker class in imagej.process ...) created by bdezonia
15:49 Ticket #198 (write unit tests for all new ImageJ classes) created by bdezonia
15:48 Ticket #197 (ImgLibProcessor - rewrite/refactor the short/float 3x3 filter routines) closed by bdezonia
fixed
15:48 Ticket #197 (ImgLibProcessor - rewrite/refactor the short/float 3x3 filter routines) created by bdezonia
15:46 Ticket #196 (ImgLibProcessor - get rid of Operation class) closed by bdezonia
fixed
15:46 Ticket #196 (ImgLibProcessor - get rid of Operation class) created by bdezonia
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