Timeline


and

07/21/10:

15:17 Ticket #136 (OME plugin prep work) created by bdezonia
LOCI will be participating in writing an IJ plugin to download data from …
15:09 Ticket #133 (Move Hudson onto Skynet) closed by bdezonia
fixed: Hudson installed and two jobs defined. Polling for changes. Tests passing.
15:08 Ticket #131 (Define Hudson jobs) closed by bdezonia
fixed: All jobs correctly defined. Will need to deal with Maven when time comes.
15:07 Ticket #97 (Set up Hudson for continuous build integration) closed by bdezonia
fixed

07/20/10:

14:11 Ticket #134 (ShapeRoiTest bug) closed by bdezonia
fixed

07/16/10:

17:20 Ticket #135 (Post vacation tasks) closed by bdezonia
fixed
17:20 Ticket #135 (Post vacation tasks) created by bdezonia
- catchup on Fiji and IJ emails - spend some time improving Eclipse skills …
17:13 Ticket #134 (ShapeRoiTest bug) created by bdezonia
17:04 Ticket #133 (Move Hudson onto Skynet) created by bdezonia
Once maven in place, imglib dependencies resolved, etc. then install …
17:02 Ticket #132 (Setup new rack server (dev testing box)) created by bdezonia
Once new rack server arrives get into rack and assist with setup.
17:01 Ticket #131 (Define Hudson jobs) created by bdezonia
Starting on temporary server. Defining two jobs: ImageJ and LOCI projects. …
16:53 Ticket #130 (Write tests for RandomAccessStream) closed by bdezonia
fixed
16:53 Ticket #130 (Write tests for RandomAccessStream) created by bdezonia
16:49 Ticket #129 (Prep work for imglib integration meeting) created by bdezonia
16:48 Ticket #128 (Setup Hudson on temporary server) closed by bdezonia
fixed
16:48 Ticket #128 (Setup Hudson on temporary server) created by bdezonia

07/15/10:

08:44 Ticket #127 (Maven OSGI ImageJ) created by rlentz
Start refactoring ImageJ using the ImageJ/OSGI model.

07/13/10:

15:48 Ticket #125 (Update CellProfiler to Bioformats 4.2.0 stable) closed by leek
fixed: I've checked in changes that make CP work with BioFormats and it's passing …
13:03 Ticket #126 (OpenCL Publication) created by rlentz
Develop a 18-20 page draft paper for the journal of bioinformatics paper …
09:46 Ticket #125 (Update CellProfiler to Bioformats 4.2.0 stable) created by leek
Update the loci_tools.jar in CellProfiler to the stable release and …

07/12/10:

15:15 Ticket #119 (OpenCL Publication) closed by rlentz
fixed: More details can be found at: …
14:28 Ticket #67 (Get "SLIMPlugin" roughly working) closed by aivar
fixed: Plugin is working sufficiently to test curve fitting with real .sdt files …
13:11 WikiStart edited by curtis
(diff)

07/09/10:

23:00 Milestone biweekly-2010: Jun-28 to Jul-09 completed
Tasks from 2010-Jun-28 through 2010-Jul-09.
10:45 Ticket #49 (Finish BF ImporterTest::testColorComposite()) closed by curtis
wontfix: All ImporterTest tests pass as of  loci-java:r6682, including …
10:44 Ticket #50 (Finish BF ImporterTest::testColorDefault()) closed by curtis
wontfix: All ImporterTest tests pass as of  loci-java:r6682, including …
10:44 Ticket #51 (Finish BF ImporterTest::testColorColorized()) closed by curtis
wontfix: All ImporterTest tests pass as of  loci-java:r6682, including …
10:43 Ticket #53 (Finish BF ImporterTest::testColorGrayscale()) closed by curtis
wontfix: All ImporterTest tests pass as of  loci-java:r6682, including …
10:42 Ticket #54 (Finish BF ImporterTest::testColorCustom()) closed by curtis
wontfix: All ImporterTest tests pass as of  loci-java:r6682, including …
10:41 Ticket #87 (Implement BF ImporterTest::testComboConcatColorize()) closed by curtis
wontfix: OK to leave unimplemented for now. We may expand the ImporterTest tests at …
10:40 Ticket #88 (Implement BF ImporterTest::testComboColorizeSplit()) closed by curtis
wontfix: OK to leave unimplemented for now. We may expand the ImporterTest tests at …
10:40 Ticket #89 (Implement BF ImporterTest::testComboConcatColorizeSplit()) closed by curtis
wontfix: OK to leave unimplemented for now. We may expand the ImporterTest tests at …
10:38 Ticket #106 (BFImporterTest : add subcase test code for composite images) closed by curtis
fixed: All ImporterTest tests pass as of r6682, including testCompositeSubcases. …
10:19 Ticket #61 (Fix testMemoryRecordModifications) closed by curtis
wontfix: We have had no user feedback on or requests for the "Record modifications …
10:11 Ticket #68 (Make sure all ImporterTest tests are implemented and pass) closed by curtis
fixed: As of  loci-java:r6682, all ImporterTest tests pass. It will now be …

06/29/10:

14:50 Ticket #124 (Find a cure for AWT - WX woes on MacOS) created by afraser
We are unable to run ImageJ from CP on MacOS due to a confict between Java …
14:31 Ticket #118 (Fix handling of images with multiple LUTs) closed by curtis
fixed: Fixed in  loci-java:changeset:6598.
13:40 Ticket #123 (Announce CellProfiler / ImageJ interoperability) created by leek
Post to the imagej-devel mailing list after our upcoming release. …
13:32 Ticket #79 (Run ImageJ Neuron Plugin from CellProfiler) closed by leek
fixed
13:07 Ticket #99 (OpenCL Publication) closed by rlentz
fixed
13:01 Ticket #122 (Use VisAD to show SLIMCurve results within ImageJ) created by aivar
Use VisAD within ImageJ. Show results using VisAD.
11:13 Ticket #121 (CellProfiler 2.0 paper highlighting ImageJ interoperability) created by leek
Write a paper announcing CellProfiler 2.0, highlighting its …
11:08 Ticket #22 (ImageJ module for CellProfiler) closed by leek
fixed: CellProfiler now has a RunImageJ module. The module can either run …
10:23 Ticket #120 (Prototype App. on NetBeans Platform) created by gharris
Build a prototype application on the NetBeans Platform to demonstrate how …
10:10 Ticket #81 (OSGi Research) closed by gharris
fixed
10:08 Ticket #95 (Modularity Infrastructure) closed by gharris
fixed
09:16 Ticket #119 (OpenCL Publication) created by rlentz
Move the kernel tests into the JUnit test package.
09:15 Ticket #103 (OpenCL Publication) closed by rlentz
fixed

06/28/10:

17:15 Ticket #75 (Email community with announcement of LOCI plugins enhancements) closed by curtis
fixed: Done. …
16:35 Ticket #118 (Fix handling of images with multiple LUTs) created by curtis
Some files have one LUT per channel. With my recent updates to the color …
16:33 Ticket #117 (Address FIXME code in LOCI plugins for ImageJ) created by curtis
There are several sections of code labeled "CTR FIXME" in the LOCI plugins …
16:12 Ticket #116 (Document Bio-Formats usage with FARSIGHT) created by curtis
We have instructions for compiling Bio-Formats for use with ITK, but we …
11:29 Ticket #60 (Implement BF ImporterTest::testMacros()) closed by bdezonia
wontfix: Curtis found other ways of testing.
11:23 Ticket #115 (ImageJ testing : write tests for Wand) closed by bdezonia
fixed
11:23 Ticket #115 (ImageJ testing : write tests for Wand) created by bdezonia
11:22 Ticket #114 (ImageJ testing : write tests for TrimmedButton) closed by bdezonia
fixed
11:22 Ticket #114 (ImageJ testing : write tests for TrimmedButton) created by bdezonia
11:21 Ticket #113 (ImageJ testing : write tests for Toolbar) closed by bdezonia
fixed
11:21 Ticket #113 (ImageJ testing : write tests for Toolbar) created by bdezonia
11:20 Ticket #112 (ImageJ testing : write tests for ProgressBar) closed by bdezonia
fixed
11:20 Ticket #112 (ImageJ testing : write tests for ProgressBar) created by bdezonia
11:19 Ticket #111 (ImageJ testing : write tests for ProfilePlot) closed by bdezonia
fixed
11:19 Ticket #111 (ImageJ testing : write tests for ProfilePlot) created by bdezonia
11:19 Ticket #110 (ImageJ testing : write tests for Plot) closed by bdezonia
fixed
11:18 Ticket #110 (ImageJ testing : write tests for Plot) created by bdezonia
11:18 Ticket #109 (ImageJ testing : write tests for Overlay) closed by bdezonia
fixed
11:18 Ticket #109 (ImageJ testing : write tests for Overlay) created by bdezonia
11:17 Ticket #108 (ImageJ testing : write tests for VirtualStack) closed by bdezonia
fixed
11:17 Ticket #108 (ImageJ testing : write tests for VirtualStack) created by bdezonia
11:15 Ticket #106 (BFImporterTest : add subcase test code for composite images) reopened by bdezonia
11:15 Ticket #107 (ImageJ testing : finish writing tests for ShapeRoiTest) closed by bdezonia
fixed
11:15 Ticket #107 (ImageJ testing : finish writing tests for ShapeRoiTest) created by bdezonia
11:14 Ticket #106 (BFImporterTest : add subcase test code for composite images) closed by bdezonia
fixed
11:14 Ticket #106 (BFImporterTest : add subcase test code for composite images) created by bdezonia
11:12 Ticket #105 (BF ImporterTest : refactor code) closed by bdezonia
fixed
11:12 Ticket #105 (BF ImporterTest : refactor code) created by bdezonia
11:11 Ticket #104 (BFImporterTest : add low level indexed pixel support) closed by bdezonia
fixed
11:11 Ticket #104 (BFImporterTest : add low level indexed pixel support) created by bdezonia
11:07 Ticket #103 (OpenCL Publication) created by rlentz
Implement a reduce function in C using the OpenCL shared memory model.

06/25/10:

23:00 Milestone biweekly-2010: Jun-14 to Jun-25 completed
Tasks from 2010-Jun-14 through 2010-Jun-25.

06/22/10:

17:19 Ticket #65 (Fix Default color mode in Bio-Formats Importer) closed by curtis
fixed: r6554 implements reasonable behavior for the default color mode in various …
17:19 Ticket #58 (Fix CompositeImage edge cases in Bio-Formats Importer) closed by curtis
fixed:  loci-java:r6554 largely addresses these issues, though more testing is …
14:42 Ticket #63 (Jar2Lib bug) closed by bselinsky
fixed: Fixed
12:06 Ticket #102 (Contact ITK community regarding bf-core library split) created by curtis
Once ticket #100 is complete, we can inform the ITK community that it is …
12:06 Ticket #101 (Update Bio-Formats in VisAD repository) created by curtis
The VisAD repository has a very old LGPL version of Bio-Formats. With …
12:04 Ticket #100 (Bio-Formats core library split) created by curtis
Bio-Formats needs to be split into two halves: 1) SCIFIO: the core API, …
11:34 Ticket #99 (OpenCL Publication) created by rlentz
Several efforts remain for the OpenCL publication. This task involves …
11:21 Ticket #52 (Trac ticket #36 update) closed by rlentz
fixed: This effort experienced interruption by ImageJ OSGI Demo work and was …
11:16 Ticket #36 (Explore OpenCL option for plugins) closed by rlentz
fixed
11:00 Ticket #98 (Generate OSGI Demo) closed by rlentz
fixed
10:58 Ticket #98 (Generate OSGI Demo) created by rlentz
Assist Grant by generating an OSGI demo using the Interface - Service - …
10:53 Ticket #1 (Identify projects with dependencies on ImageJ) closed by rlentz
fixed

06/21/10:

14:42 Ticket #97 (Set up Hudson for continuous build integration) created by curtis
Once we have Maven set up (see ticket #96), the next step is to configure …
14:40 Ticket #96 (Migrate LOCI repositories to Maven) created by curtis
Currently we use custom Ant scripts for the LOCI Java Software repository. …
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