Timeline


and

06/22/10:

17:19 Ticket #65 (Fix Default color mode in Bio-Formats Importer) closed by curtis
fixed: r6554 implements reasonable behavior for the default color mode in various …
17:19 Ticket #58 (Fix CompositeImage edge cases in Bio-Formats Importer) closed by curtis
fixed:  loci-java:r6554 largely addresses these issues, though more testing is …
14:42 Ticket #63 (Jar2Lib bug) closed by bselinsky
fixed: Fixed
12:06 Ticket #102 (Contact ITK community regarding bf-core library split) created by curtis
Once ticket #100 is complete, we can inform the ITK community that it is …
12:06 Ticket #101 (Update Bio-Formats in VisAD repository) created by curtis
The VisAD repository has a very old LGPL version of Bio-Formats. With …
12:04 Ticket #100 (Bio-Formats core library split) created by curtis
Bio-Formats needs to be split into two halves: 1) SCIFIO: the core API, …
11:34 Ticket #99 (OpenCL Publication) created by rlentz
Several efforts remain for the OpenCL publication. This task involves …
11:21 Ticket #52 (Trac ticket #36 update) closed by rlentz
fixed: This effort experienced interruption by ImageJ OSGI Demo work and was …
11:16 Ticket #36 (Explore OpenCL option for plugins) closed by rlentz
fixed
11:00 Ticket #98 (Generate OSGI Demo) closed by rlentz
fixed
10:58 Ticket #98 (Generate OSGI Demo) created by rlentz
Assist Grant by generating an OSGI demo using the Interface - Service - …
10:53 Ticket #1 (Identify projects with dependencies on ImageJ) closed by rlentz
fixed

06/21/10:

14:42 Ticket #97 (Set up Hudson for continuous build integration) created by curtis
Once we have Maven set up (see ticket #96), the next step is to configure …
14:40 Ticket #96 (Migrate LOCI repositories to Maven) created by curtis
Currently we use custom Ant scripts for the LOCI Java Software repository. …

06/17/10:

19:55 Ticket #71 (Start using JFreeChart for SLIM graphing) closed by aivar
fixed: Main decay/fit/residual chart is working.
11:49 Ticket #84 (Implement BF ImporterTest::testComboConcatSplit()) closed by bdezonia
fixed

06/11/10:

23:00 Milestone biweekly-2010: Jun-01 to Jun-11 completed
Tasks from 2010-Jun-01 through 2010-Jun-11.

06/07/10:

14:39 Ticket #95 (Modularity Infrastructure) created by gharris
Modularity design for a "component-based system" - sometimes called module …

06/04/10:

17:05 Ticket #94 (Improve BF ImporterTest::testMemoryCrop()) closed by bdezonia
fixed
17:05 Ticket #94 (Improve BF ImporterTest::testMemoryCrop()) created by bdezonia
17:04 Ticket #93 (Improve BF ImporterTest::testDatasetGroup()) closed by bdezonia
fixed
17:03 Ticket #93 (Improve BF ImporterTest::testDatasetGroup()) created by bdezonia
17:03 Ticket #92 (FInish BF ImporterTest::testComboCropAutoscale()) closed by bdezonia
fixed
17:02 Ticket #92 (FInish BF ImporterTest::testComboCropAutoscale()) created by bdezonia
17:00 Ticket #91 (Finish BF ImporterTest::testMemoryCrop()) closed by bdezonia
fixed
16:59 Ticket #91 (Finish BF ImporterTest::testMemoryCrop()) created by bdezonia
09:46 Ticket #59 (Fix bug in MinMaxCalculator with cropped images) closed by melissa
fixed: Fixed in  loci-java:r6482.

06/03/10:

17:22 Ticket #72 (Help Abhinav with flow cytometry WiscScan code) closed by curtis
fixed: We fixed the mysterious ArrayIndexOutOfBoundsException, and the FC code is …
11:07 Ticket #83 (Implement BF ImporterTest::testComboManyOptions) closed by bdezonia
fixed
07:53 Ticket #90 (BaseTiffMock endianness) created by leek
The BaseTiffMock writes shorts of length 1 as ints in the IFD. This works …

06/02/10:

15:59 Ticket #82 (Implement BF ImporterTest combination tests) closed by bdezonia
fixed: Split this ticket into multiple tasks.
15:56 Ticket #89 (Implement BF ImporterTest::testComboConcatColorizeSplit()) created by bdezonia
15:55 Ticket #88 (Implement BF ImporterTest::testComboColorizeSplit()) created by bdezonia
15:53 Ticket #87 (Implement BF ImporterTest::testComboConcatColorize()) created by bdezonia
15:52 Ticket #86 (Finish BF ImporterTest::testAutoscale() to handle signed integer data) closed by bdezonia
fixed
15:52 Ticket #86 (Finish BF ImporterTest::testAutoscale() to handle signed integer data) created by bdezonia
15:50 Ticket #85 (Get BF ImporterTest::testMemoryRange to incorporate step by 0 code) closed by bdezonia
fixed
15:50 Ticket #85 (Get BF ImporterTest::testMemoryRange to incorporate step by 0 code) created by bdezonia
15:49 Ticket #84 (Implement BF ImporterTest::testComboConcatSplit()) created by bdezonia
15:47 Ticket #83 (Implement BF ImporterTest::testComboManyOptions) created by bdezonia
Write a test to exercise a fair amount of BF options at the same time.
15:20 Ticket #73 (Help Jimmy & Steve with region-based SLIM analysis in R) closed by curtis
fixed: The TextReader work was finished in  loci-java:r6443. Steve may reply later …
14:49 Ticket #57 (Fix problems when combining ReaderWrappers) closed by curtis
fixed: Fixed in  loci-java:r6445.
14:48 Ticket #55 (Fix problem with TextReader and Bio-Formats Importer) closed by curtis
fixed: Fixed in  loci-java:r6443.

06/01/10:

16:22 Ticket #82 (Implement BF ImporterTest combination tests) created by bdezonia
We need a few tests that exercise a combination of options of the BF …
15:41 Ticket #81 (OSGi Research) created by gharris
Part of #30 1) Advantages/disadvantages of using OSGi as module/extension …
15:27 Ticket #80 (Action/Command Architecture Explorations) created by gharris
Related to tickets MVC, Undo , & I18N
15:11 Ticket #79 (Run ImageJ Neuron Plugin from CellProfiler) created by afraser
Part of our grant is to show that interfacing with ImageJ allows …
15:04 Ticket #78 (CellProfiler-related bioformats tests) created by leek
Do work within the Bioformats testing framework, developing a set of tests …
14:52 Ticket #77 (Get NetID authentication working for Microscopy web site) created by curtis
It would be nice to allow users to log in to the Microscopy site using …
14:41 Ticket #76 (Continue ongoing collaboration with Jimmy and Steve) created by aivar
Continue working with Jimmy, Steve, and Curtis to understand and aid their …
14:38 Ticket #75 (Email community with announcement of LOCI plugins enhancements) created by curtis
Several people have been waiting for a better API for the LOCI plugins, …
14:37 Ticket #74 (Rework P. Barbers SLIMCurve code to work with new SLIMPlugin version of ...) created by aivar
Depends on task #67. Once the SLIMPlugin framework is in place as a …
14:34 Ticket #73 (Help Jimmy & Steve with region-based SLIM analysis in R) created by curtis
With Aivar, as needed, I will help/advise Jimmy & Steve to get …
14:31 Ticket #72 (Help Abhinav with flow cytometry WiscScan code) created by curtis
As needed, I will help Abhinav get the FC code working in WiscScan 5.
14:30 Ticket #71 (Start using JFreeChart for SLIM graphing) created by aivar
Curtis & I have identified JFreeChart as a suitable charting package for …
14:30 Ticket #70 (Integrate Bio-Formats C++ bindings builds with Hudson) created by curtis
* Test the latest jar2lib code on Mac OS X, Linux and Windows, 32-bit and …
14:28 Ticket #69 (Catch up on email) created by curtis
In the last few days of heavy development I have fallen behind on email …
14:27 Ticket #68 (Make sure all ImporterTest tests are implemented and pass) created by curtis
In preparation for the 4.2 Bio-Formats release, we want to have a robust …
14:25 Ticket #67 (Get "SLIMPlugin" roughly working) created by aivar
(I've been calling my version of SLIMPlotter rewritten as an IJ plugin …
14:21 Ticket #66 (Jar2Lib Farsight) created by bselinsky
Use the Jar2Lib code to develop a C interface to Farsight
14:20 Ticket #65 (Fix Default color mode in Bio-Formats Importer) created by curtis
The "Default" color mode in the new Bio-Formats Importer currently behaves …
14:19 Ticket #64 (Jar2lib testing) created by bselinsky
1st test - other user on my machine to show running independently 2nd test …
14:17 Ticket #63 (Jar2Lib bug) created by bselinsky
Jar2Lib only currently works with the mindep flag turned off. Apparently …
14:16 Ticket #62 (Fix -debug option in showinf) created by curtis
Would be nice to make the "-debug" flag in showinf work again before the …
14:15 Ticket #61 (Fix testMemoryRecordModifications) created by curtis
The option "Record modifications to virtual stack" may not be working …
13:33 Ticket #60 (Implement BF ImporterTest::testMacros()) created by bdezonia
13:24 Ticket #59 (Fix bug in MinMaxCalculator with cropped images) created by curtis
There is a bug with MinMaxCalculator where the min is computed over the …
13:21 Ticket #58 (Fix CompositeImage edge cases in Bio-Formats Importer) created by curtis
The Bio-Formats Importer now uses CompositeImages all the time. This does …
13:19 Ticket #57 (Fix problems when combining ReaderWrappers) created by curtis
There are multiple problems when combining certain ReaderWrappers, such as …
12:50 Ticket #56 (Get JSR-223 working with Java 5) created by curtis
We want to use the Java Scripting Framework (JSR-223) in ImageJ, but we …
12:20 Ticket #55 (Fix problem with TextReader and Bio-Formats Importer) created by curtis
I recently added a loci.formats.in.TextReader class to Bio-Formats. It …
12:17 Ticket #54 (Finish BF ImporterTest::testColorCustom()) created by bdezonia
12:11 Ticket #53 (Finish BF ImporterTest::testColorGrayscale()) created by bdezonia
12:10 Ticket #52 (Trac ticket #36 update) created by rlentz
On June 4, Kevin and Curtis will review the performance data for the …
12:08 Ticket #51 (Finish BF ImporterTest::testColorColorized()) created by bdezonia
12:06 Ticket #50 (Finish BF ImporterTest::testColorDefault()) created by bdezonia
11:56 Ticket #49 (Finish BF ImporterTest::testColorComposite()) created by bdezonia
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