Ticket #1907 (closed defect: fixed)

Opened 6 years ago

Last modified 6 years ago

Files open multichannel incorrectly

Reported by: bdezonia Owned by: hinerm
Priority: major Milestone: imagej2-b7-ndim-data
Component: I/O Version:
Severity: serious Keywords:
Cc: Blocked By:
Blocking: #1563

Description

I have a number of files that open as multichannel when in fact they may have time points or z planes as well. I've attached one. It loads differently in Fiji vs. IJ2.

Attachments

organ-of-corti.tif Download (15.6 MB) - added by bdezonia 6 years ago.
MF-2CH-Z-T.tif Download (25.4 MB) - added by bdezonia 6 years ago.
Another example: compare to BF Importer results in Fiji

Change History

Changed 6 years ago by bdezonia

Changed 6 years ago by bdezonia

Another example: compare to BF Importer results in Fiji

comment:1 Changed 6 years ago by hinerm

There were two issues here:

  • axis labels were being mislabeled

fixed in:  https://github.com/scifio/scifio/commit/c8b1de8af931426ebe93e86d12ed024bdb15c869

  • TIFFs were being opened by the MinimalTIFFFormat instead of the TIFFFormat because of a prioritization error.

fixed in:  https://github.com/scifio/scifio/commit/53b704524873039d396b91dc521c7f06592d34d7

Note that organ-of-corti.tif still looks off, I believe for the same reasons as #1908

comment:2 Changed 6 years ago by bdezonia

  • Status changed from new to closed
  • Resolution set to fixed
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