Ticket #1563 (closed feature: fixed)

Opened 7 years ago

Last modified 6 years ago

Fix obviously failing commands [ndim-data]

Reported by: bdezonia Owned by: bdezonia
Priority: minor Milestone: imagej2-b7-ndim-data
Component: Core Version:
Severity: serious Keywords:
Cc: Blocked By: #799, #1335, #1405, #1478, #1549, #1643, #1694, #1703, #1758, #1761, #1771, #1772, #1780, #1781, #1798, #1811, #1834, #1835, #1870, #1877, #1880, #1882, #1887, #1892, #1897, #1898, #1900, #1907
Blocking:

Description

Some commands in IJ2 fail in a very apparent fashion. They should be addressed preferentially. See blockers to this ticket.

Change History

comment:1 Changed 7 years ago by bdezonia

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comment:2 Changed 7 years ago by bdezonia

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comment:3 Changed 7 years ago by bdezonia

  • Summary changed from Fix obviously failing commands (2.0.0-beta6) to Fix obviously failing commands (2.0.0-beta7)

comment:4 Changed 7 years ago by bdezonia

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comment:5 Changed 7 years ago by bdezonia

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comment:6 Changed 7 years ago by bdezonia

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comment:7 Changed 7 years ago by bdezonia

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comment:8 Changed 7 years ago by bdezonia

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comment:9 Changed 7 years ago by curtis

  • Summary changed from Fix obviously failing commands (2.0.0-beta7) to Fix obviously failing commands [ndim-data]

comment:10 Changed 7 years ago by bdezonia

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comment:11 Changed 7 years ago by bdezonia

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comment:16 Changed 7 years ago by curtis

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comment:17 Changed 7 years ago by bdezonia

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comment:26 Changed 6 years ago by bdezonia

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comment:27 Changed 6 years ago by bdezonia

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comment:29 Changed 6 years ago by bdezonia

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comment:30 Changed 6 years ago by bdezonia

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(In #1724) With commit 2be2b78248ee90292f99acbc11b771c9fdf09159 the exception is now avoided. Pushing the rest of this ticket (the UNDO approach) to a later time.

comment:31 Changed 6 years ago by bdezonia

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comment:32 Changed 6 years ago by bdezonia

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comment:37 Changed 6 years ago by bdezonia

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comment:38 Changed 6 years ago by curtis

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(In #1840) I took a crack at addressing this issue, using the modeless JDialog approach discussed at  SO #16175884. But doing it right (which we ultimately must do) is too involved for beta7.

comment:39 Changed 6 years ago by bdezonia

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comment:47 Changed 6 years ago by bdezonia

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(In #1880) This issue no longer apparent on the scifio-cells branch (soon to be merged)

comment:48 Changed 6 years ago by bdezonia

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(In #799) The code around this has changed such that this error cannot be replicated. Closiing.

comment:49 Changed 6 years ago by bdezonia

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comment:60 Changed 6 years ago by bdezonia

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comment:61 Changed 6 years ago by bdezonia

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(In #1881) Note that scifio-cells has been merged to master.

comment:62 Changed 6 years ago by bdezonia

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comment:63 Changed 6 years ago by bdezonia

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comment:64 Changed 6 years ago by bdezonia

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comment:65 Changed 6 years ago by hinerm

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(In #1908) Currently, these images are opened similarly using SCIFIO as in FIJI with the Bio-Formats importer.

In both cases, they are opened as RGBA. Compositing the alpha channel makes the images look off.

IJ1 seems to be taking extra steps to process the alpha channel out, and opens this as an RGB image instead.

So we need to decide how to handle alpha channels.

Also, the color table for the 4th channel is blue in IJ2 but the Bio-Formats importer and IJ1 use white.

comment:66 Changed 6 years ago by bdezonia

  • Status changed from new to closed
  • Resolution set to fixed

All constituent tickets have been resolved for this beta. Closing feature.

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