Ticket #147 (closed defect: duplicate)

Opened 9 years ago

Last modified 9 years ago

Bioformats can't open Metamorph z-stack

Reported by: leek Owned by: leek
Priority: major Milestone: biweekly-2010: Oct-18 to Oct-29
Component: Analysis Plugins Version:
Severity: serious Keywords:
Cc: Blocked By:
Blocking:

Description

A CellProfiler user submitted a MetaMorph multi-image tiff. It is a z-stack, but the user took two exposures at the same z-height. BioFormats can't load it because the MetamorphTiffReader.java tries to guess the z-count and t-count (code at line 110, roughly) and gets confused by the duplicate z-heights.

The file is retrievable from the CellProfiler SVN:
 https://svn.broadinstitute.org/CellProfiler/trunk/TestImages/397_w1447%20laser_s17_t1_bad.TIF

Change History

comment:1 Changed 9 years ago by leek

  • Status changed from new to closed
  • Resolution set to duplicate

This is being addressed by other work on the 5-channel representation.

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